current user: public

anford Burnham Prebys Medical Discovery Institute
Please be advised that due to the planned maintenance our websites might be temporarily unavailable on December 17-18, 2018. We apologise for the inconvenience that this may cause.

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 3034next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 CAJ09955.1 ATP/GTP-binding site motif A (P-loop):Bacterial chromosomal replication initiator protein, DnaA:AAA ATPase:Neutral zinc metal [Brucella abortus 2308] 496 HGM_OVER 384-472 -3.120 13  PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;
2 CAJ09958.1 DNA polymerase III, beta chain:Inorganic pyrophosphatase [Brucella abortus 2308] 397 HGM_OVER 26-345 -3.870 PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;
3 CAJ09959.1 RecF protein:ATP/GTP-binding site motif A (P-loop):Aldehyde dehydrogenase:SMC protein, N-terminal:AAA ATPase [Brucella abortus 2308] 384 HGM_OVER 12-151 -2.300 PB071107 _Gut.Meta.Jp.0066071_ gi|162701604|dbj|BAAY01026246.1||2 (+ 344:749~0 complete)
4 CAJ09960.1 NAD binding site:UBA/THIF-type NAD/FAD binding fold:Aromatic-ring hydroxylase [Brucella abortus 2308] 260 HGM_OVER 32-242 -5.690 13  PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]
5 CAJ09961.1 Pyridine nucleotide-disulphide oxidoreductase, class I:D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain [Brucella abortus 2308] 318 HGM_OVER 175-283 -4.100 12  PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
6 CAJ09962.1 ATP/GTP-binding site motif A (P-loop):ABC transporter:AAA ATPase [Brucella abortus 2308] 541 HGM_OVER 2-78 -4.680 HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000;
7 CAJ09963.1 Binding-protein-dependent transport systems inner membrane component [Brucella abortus 2308] 379 HGM_OVER 170-271 -4.210 17  PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]
8 CAJ09964.1 Binding-protein-dependent transport systems inner membrane component [Brucella abortus 2308] 365 HGM_OVER 4-117 -4.140 16  HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;
9 CAJ09965.1 Bacterial extracellular solute-binding protein, family 5 [Brucella abortus 2308] 604 HGM_OVER 104-189 -2.450 PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;
10 CAJ09966.1 Bacterial extracellular solute-binding protein, family 5 [Brucella abortus 2308] 622 HGM_OVER 105-189 -3.120 PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;
11 CAJ09967.1 conserved hypothetical protein [Brucella abortus 2308] 107 HGM_OVER 14-98 -3.190 11  PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;
12 CAJ09968.1 conserved hypothetical protein [Brucella abortus 2308] 66 HGM_OVER 1-66 -5.180 19  PB044863 Q5LB69_BACFN/1-105 PB044863; Pfam-B_44863;
13 CAJ09969.1 conserved hypothetical protein [Brucella abortus 2308] 116 HGM_OVER 38-114 -3.590 18  PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]
14 CAJ09971.1 conserved domain protein [Brucella abortus 2308] 66 HGM_OVER 12-48 -2.960 22  PB008694 Q9F6U1_BACTN/1-190 PB008694; Pfam-B_8694;
15 CAJ09972.1 Enoyl-CoA hydratase/isomerase [Brucella abortus 2308] 264 HGM_OVER 22-145 -4.400 15  PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;
16 CAJ09973.1 HMG-CoA lyase-like [Brucella abortus 2308] 287 HGM_OVER 1-141 -3.630 14  HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;
17 CAJ09974.1 Biotin/lipoyl attachment:Biotin-requiring enzyme, attachment site:Carbamoyl-phosphate synthase L chain, ATP-binding:Carbamoyl [Brucella abortus 2308] 673 HGM_OVER 162-395 -3.640 11  PB000716 Q60CS7_METCA/1-294 PB000716; Pfam-B_716;
18 CAJ09975.1 Carboxyl transferase family [Brucella abortus 2308] 535 HGM_OVER 317-405 -3.070 19  HGC00672 gi|162843654|dbj|BABA01001055.1|4.0 TMP00845;
19 CAJ09978.1 unnamed protein product [Brucella abortus 2308] 127 HGM_OVER 7-34 -6.490 20  PB044572 Q8A533_BACTN/1-343 PB044572; Pfam-B_44572;
20 CAJ09979.1 ATP/GTP-binding site motif A (P-loop):EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase):3-phosphoshikimate 1-carbo [Brucella abortus 2308] 450 HGM_OVER 59-317 -3.450 13  PB001565 Q6LS01_PHOPR/1-384 PB001565; Pfam-B_1565;


FFAS is supported by the NIH grant R01-GM087218-01
1 2 0 3 0 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.