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anford Burnham Prebys Medical Discovery Institute
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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 3034next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 CAJ09955.1 ATP/GTP-binding site motif A (P-loop):Bacterial chromosomal replication initiator protein, DnaA:AAA ATPase:Neutral zinc metal [Brucella abortus 2308] 496 JCSG0516 6-492 -124.000 36  C.LS21333A NP_418828.1 430427 Purified-2014-07-08
2 CAJ09958.1 DNA polymerase III, beta chain:Inorganic pyrophosphatase [Brucella abortus 2308] 397 JCSG0516 26-397 -97.500 26  TM0262 TM0262 282139 PDB-2004-11-09
3 CAJ09959.1 RecF protein:ATP/GTP-binding site motif A (P-loop):Aldehyde dehydrogenase:SMC protein, N-terminal:AAA ATPase [Brucella abortus 2308] 384 JCSG0516 14-380 -29.200 17  NT12358C DHAF_12NOV03_CONTIG1086_REVISED_GENE3509 378730 Purified-2008-01-24
4 CAJ09960.1 NAD binding site:UBA/THIF-type NAD/FAD binding fold:Aromatic-ring hydroxylase [Brucella abortus 2308] 260 JCSG0516 19-204 -35.000 26  KN.B21272A.UBA3 BC022853 429644 Selected-2013-03-25
5 CAJ09961.1 Pyridine nucleotide-disulphide oxidoreductase, class I:D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain [Brucella abortus 2308] 318 JCSG0516 46-315 -44.100 23  TM0327 TM0327 282202 Purified-2001-03-14
6 CAJ09962.1 ATP/GTP-binding site motif A (P-loop):ABC transporter:AAA ATPase [Brucella abortus 2308] 541 JCSG0516 5-527 -114.000 23  NT0027AA NP_987740.1 378503 Purified-2007-10-10
7 CAJ09963.1 Binding-protein-dependent transport systems inner membrane component [Brucella abortus 2308] 379 JCSG0516 11-377 -86.200 28  TM0059 TM0059 281940 Purified-2001-08-24
8 CAJ09964.1 Binding-protein-dependent transport systems inner membrane component [Brucella abortus 2308] 365 JCSG0516 1-361 -109.000 34  TM0532 TM0532 282405 Purified-2001-10-10
9 CAJ09965.1 Bacterial extracellular solute-binding protein, family 5 [Brucella abortus 2308] 604 JCSG0516 1-604 -53.000 14  TM1199 TM1199 283064 Crystal|NMR-2005-01-23
42-604 -75.700 16  TM0071 TM0071 281952 Purified-2004-11-16
10 CAJ09966.1 Bacterial extracellular solute-binding protein, family 5 [Brucella abortus 2308] 622 JCSG0516 1-622 -82.100 17  TM0071 TM0071 281952 Purified-2004-11-16
11 CAJ09967.1 conserved hypothetical protein [Brucella abortus 2308] 107 JCSG0516 5-73 -6.400 27  GE8810CY YP_264758.1 396778 Selected-2008-07-09
12 CAJ09968.1 conserved hypothetical protein [Brucella abortus 2308] 66 JCSG0516 2-66 -5.780 12  WS.A20872A.REV ABI79892 429842 Crystal|NMR-2012-10-15
13 CAJ09969.1 conserved hypothetical protein [Brucella abortus 2308] 116 JCSG0516 4-113 -6.290 17  FB9776B YP_831618.1 375017 Crystal|NMR-2010-01-28
14 CAJ09971.1 conserved domain protein [Brucella abortus 2308] 66 JCSG0516 1-64 -5.770 23  MI9663A YP_461098.1 399109 PDB-2011-05-23
15 CAJ09972.1 Enoyl-CoA hydratase/isomerase [Brucella abortus 2308] 264 JCSG0516 3-261 -62.600 22  WT20715A.ECH1 NM_001398 422936 Selected-2010-11-11
16 CAJ09973.1 HMG-CoA lyase-like [Brucella abortus 2308] 287 JCSG0516 3-281 -24.500 19  TM0553 TM0553 282426 Crystal|NMR-2005-01-21
17 CAJ09974.1 Biotin/lipoyl attachment:Biotin-requiring enzyme, attachment site:Carbamoyl-phosphate synthase L chain, ATP-binding:Carbamoyl [Brucella abortus 2308] 673 JCSG0516 5-673 -147.000 45  MA16080A NP_064551.3 400332 Cloned-2009-02-26
18 CAJ09975.1 Carboxyl transferase family [Brucella abortus 2308] 535 JCSG0516 1-535 -185.000 64  MA0716C NP_071415.1 400207 Cloned-2009-02-26
19 CAJ09978.1 unnamed protein product [Brucella abortus 2308] 127 JCSG0516 11-47 -13.000 10  SP17819A ZP_02039926.1 413525 Purified-2010-09-29
39-127 -9.620 MA16111A NP_055448.1 400166 Selected-2008-12-22
20 CAJ09979.1 ATP/GTP-binding site motif A (P-loop):EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase):3-phosphoshikimate 1-carbo [Brucella abortus 2308] 450 JCSG0516 22-443 -119.000 39  TM0345 TM0345 282220 Purified-2001-03-14


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.