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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 3034next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 CAJ09955.1 ATP/GTP-binding site motif A (P-loop):Bacterial chromosomal replication initiator protein, DnaA:AAA ATPase:Neutral zinc metal [Brucella abortus 2308] 496 VFDB 122-411 -7.680 14  VFG022019(gi:15607423) (eccA3) Type VII secretion system protein EccA3 [ESX-3 (VF0521)] [Mycobacterium tuberculosis H37Rv]
2 CAJ09958.1 DNA polymerase III, beta chain:Inorganic pyrophosphatase [Brucella abortus 2308] 397 VFDB 199-372 -4.180 VFG000004(gi:33592658) (fim3) serotype 3 fimbrial subunit precursor [Fimbriae (VF0031)] [Bordetella pertussis Tohama I]
3 CAJ09959.1 RecF protein:ATP/GTP-binding site motif A (P-loop):Aldehyde dehydrogenase:SMC protein, N-terminal:AAA ATPase [Brucella abortus 2308] 384 VFDB 16-360 -11.900 17  VFG037118(gi:15676638) (recN) DNA repair protein RecN [RecN (VF0457)] [Neisseria meningitidis MC58]
4 CAJ09960.1 NAD binding site:UBA/THIF-type NAD/FAD binding fold:Aromatic-ring hydroxylase [Brucella abortus 2308] 260 VFDB 4-258 -26.100 11  VFG045336(gi:588561369) (llsY) LlsY [LLS (VF0410)] [Listeria innocua SLCC6294]
5 CAJ09961.1 Pyridine nucleotide-disulphide oxidoreductase, class I:D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain [Brucella abortus 2308] 318 VFDB 61-307 -5.800 13  VFG000360(gi:16122156) (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
6 CAJ09962.1 ATP/GTP-binding site motif A (P-loop):ABC transporter:AAA ATPase [Brucella abortus 2308] 541 VFDB 7-525 -48.000 23  VFG012509(gi:26247127) (iroC) ATP binding cassette transporter [Salmochelin (IA013)] [Escherichia coli CFT073]
7 CAJ09963.1 Binding-protein-dependent transport systems inner membrane component [Brucella abortus 2308] 379 VFDB 180-369 -8.100 VFG000249(gi:15677998) (fbpB) iron(III) ABC transporter, permease protein [FbpABC (VF0272)] [Neisseria meningitidis MC58]
8 CAJ09964.1 Binding-protein-dependent transport systems inner membrane component [Brucella abortus 2308] 365 VFDB 128-346 -7.280 13  VFG000249(gi:15677998) (fbpB) iron(III) ABC transporter, permease protein [FbpABC (VF0272)] [Neisseria meningitidis MC58]
9 CAJ09965.1 Bacterial extracellular solute-binding protein, family 5 [Brucella abortus 2308] 604 VFDB 21-559 -5.350 VFG001291(gi:21284341) (cna) collagen adhesin precursor [CNA (VF0005)] [Staphylococcus aureus subsp. aureus MW2]
10 CAJ09966.1 Bacterial extracellular solute-binding protein, family 5 [Brucella abortus 2308] 622 VFDB 26-562 -5.240 VFG002481(gi:53722525) (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
11 CAJ09967.1 conserved hypothetical protein [Brucella abortus 2308] 107 VFDB 5-100 -5.020 12  VFG012812(gi:31983551) (ospF) type III secretion system effector OspF, phosphothreonine lyase [T3SS (SS011)] [Shigella flexneri 2a str. 301]
12 CAJ09968.1 conserved hypothetical protein [Brucella abortus 2308] 66 VFDB 9-66 -5.300 12  VFG001437(gi:4836791) (cseA) CS22 adhesin protein [Adhesive fimbriae (VF0213)] [Escherichia coli str. ARG-3]
13 CAJ09969.1 conserved hypothetical protein [Brucella abortus 2308] 116 VFDB 51-109 -4.410 12  VFG007178(gi:28898474) (virG) Type III secretion system chaperone VscW [T3SS1 (VF0408)] [Vibrio parahaemolyticus RIMD 2210633]
14 CAJ09971.1 conserved domain protein [Brucella abortus 2308] 66 VFDB 1-66 -3.690 13  VFG000430(gi:16763122) (tviC) Vi polysaccharide biosynthesis protein, epimerase TviC [Vi antigen (VF0101)] [Salmonella enterica subsp. enterica serovar Typhi str. CT18]
15 CAJ09972.1 Enoyl-CoA hydratase/isomerase [Brucella abortus 2308] 264 VFDB 1-261 -6.270 11  VFG000469(gi:16764163) (slrP) type III secretion system effector SlrP, E3 ubiquitin ligase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
16 CAJ09973.1 HMG-CoA lyase-like [Brucella abortus 2308] 287 VFDB 79-188 -6.190 19  VFG001931(gi:15792793) (cadF) outer membrane fibronectin-binding protein [CadF (VF0322)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
17 CAJ09974.1 Biotin/lipoyl attachment:Biotin-requiring enzyme, attachment site:Carbamoyl-phosphate synthase L chain, ATP-binding:Carbamoyl [Brucella abortus 2308] 673 VFDB 593-672 -15.600 17  VFG005761(gi:22536829) (cylX) acetyl coenzyme A (CoA) carboxylase CylX [Beta-hemolysin/cytolysin (CVF171)] [Streptococcus agalactiae 2603V/R]
18 CAJ09975.1 Carboxyl transferase family [Brucella abortus 2308] 535 VFDB 180-527 -5.150 16  VFG002365(gi:123443283) (gmd) GDP-mannose 4,6-dehydratase [O-antigen (VF0392)] [Yersinia enterocolitica subsp. enterocolitica 8081]
19 CAJ09978.1 unnamed protein product [Brucella abortus 2308] 127 VFDB 1-123 -8.910 VFG022130(gi:15607431) (eccD3) Type IIV secretion system transmembrane protein EccD3 [ESX-3 (VF0521)] [Mycobacterium tuberculosis H37Rv]
20 CAJ09979.1 ATP/GTP-binding site motif A (P-loop):EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase):3-phosphoshikimate 1-carbo [Brucella abortus 2308] 450 VFDB 219-359 -6.110 17  VFG000374(gi:16082708) (yopK/yopQ) type III secretion system effector YopK/YopQ, regulating Yops injection from within host cells [TTSS (VF0140)] [Yersinia pestis CO92]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.