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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 5429next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|30260196|ref|NP_842573.1| chromosomal replication initiation protein (BA_0001) [Bacillus anthracis str. Ames] 446 HGM_OVER 180-333 -3.540 11  HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;
2 gi|30260197|ref|NP_842574.1| DNA polymerase III subunit beta (BA_0002) [Bacillus anthracis str. Ames] 379 HGM_OVER 209-360 -2.320 15  PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;
3 gi|30260198|ref|NP_842575.1| hypothetical protein (BA_0003) [Bacillus anthracis str. Ames] 70 HGM_OVER 21-55 -3.430 PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]
4 gi|30260199|ref|NP_842576.1| recombination protein F (BA_0004) [Bacillus anthracis str. Ames] 375 HGM_OVER 27-375 -2.530 PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]
5 gi|30260200|ref|NP_842577.1| DNA gyrase subunit B (BA_0005) [Bacillus anthracis str. Ames] 640 HGM_OVER 461-629 -4.230 16  HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;
6 gi|30260201|ref|NP_842578.1| DNA gyrase subunit A (BA_0006) [Bacillus anthracis str. Ames] 823 HGM_OVER 400-487 -3.490 PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)
7 gi|30260202|ref|NP_842579.1| inosine 5'-monophosphate dehydrogenase (BA_0008) [Bacillus anthracis str. Ames] 487 HGM_OVER 4-179 -4.580 15  PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;
8 gi|30260203|ref|NP_842580.1|(removed signalp:1-28) D-alanyl-D-alanine carboxypeptidase (BA_0009) [Bacillus anthracis str. Ames] 407 HGM_OVER 10-176 -3.580 PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)
9 gi|30260204|ref|NP_842581.1| pyridoxal biosynthesis lyase PdxS (BA_0010) [Bacillus anthracis str. Ames] 295 HGM_OVER 26-200 -3.620 16  HGC00921 gi|162841401|dbj|BABA01003308.1|3.0 TMP01242;
10 gi|30260205|ref|NP_842582.1| glutamine amidotransferase subunit PdxT (BA_0011) [Bacillus anthracis str. Ames] 196 HGM_OVER 65-190 -3.440 10  PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;
11 gi|30260206|ref|NP_842583.1| seryl-tRNA synthetase (BA_0012) [Bacillus anthracis str. Ames] 424 HGM_OVER 261-367 -3.120 13  PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]
12 gi|30260207|ref|NP_842584.1| hypothetical protein (BA_0013) [Bacillus anthracis str. Ames] 183 HGM_OVER 45-175 -3.990 12  PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;
13 gi|30260208|ref|NP_842585.1| deoxynucleoside kinase family protein (BA_0014) [Bacillus anthracis str. Ames] 222 HGM_OVER 29-222 -3.100 10  PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;
14 gi|30260209|ref|NP_842586.1| deoxynucleoside kinase family protein (BA_0015) [Bacillus anthracis str. Ames] 211 HGM_OVER 6-150 -4.180 10  PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]
15 gi|30260210|ref|NP_842587.1| isochorismatase family protein (BA_0016) [Bacillus anthracis str. Ames] 179 HGM_OVER 8-177 -4.640 PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;
16 gi|30260211|ref|NP_842588.1|(removed signalp:1-24) hypothetical protein (BA_0017) [Bacillus anthracis str. Ames] 22 HGM_OVER 5-20 -1.310 18  PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;
17 gi|30260212|ref|NP_842589.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing protein (BA_0018) [Bacillus anthracis str. Ames] 166 HGM_OVER 26-154 -3.610 11  PB038401 Q8RFH0_FUSNN/1-210 PB038401; Pfam-B_38401;
18 gi|30260213|ref|NP_842590.1| DNA polymerase III subunits gamma and tau (BA_0019) [Bacillus anthracis str. Ames] 562 HGM_OVER 8-221 -3.640 14  PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;
19 gi|30260214|ref|NP_842591.1| hypothetical protein (BA_0020) [Bacillus anthracis str. Ames] 109 HGM_OVER 8-74 -4.400 10  HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;
20 gi|30260215|ref|NP_842592.1| recombination protein RecR (BA_0021) [Bacillus anthracis str. Ames] 198 HGM_OVER 112-198 -4.230 34  PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.