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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1693next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|11497090|ref|NP_051162.1| hypothetical protein (BB_P01) [Borrelia burgdorferi B31] 407 PDB0516 11-403 -11.200 3ja7_A mol:protein length:455 Portal protein gp20
2 gi|11497091|ref|NP_051163.1| hypothetical protein (BB_P02) [Borrelia burgdorferi B31] 230 PDB0516 61-164 -6.280 14  3hvw_A mol:protein length:176 Diguanylate-cyclase (DGC)
3 gi|11497092|ref|NP_051164.1| hypothetical protein (BB_P03) [Borrelia burgdorferi B31] 185 PDB0516 1-128 -9.840 16  2e2c_A mol:protein length:156 UBIQUITIN CONJUGATING ENZYME
4 gi|11497093|ref|NP_051165.1| hypothetical protein (BB_P04) [Borrelia burgdorferi B31] 254 PDB0516 23-173 -7.650 4ds2_A mol:protein length:167 Ubiquitin-conjugating enzyme E2, putative
5 gi|11497094|ref|NP_051166.1| hypothetical protein (BB_P05) [Borrelia burgdorferi B31] 190 PDB0516 12-141 -10.300 14  3we5_A mol:protein length:173 Ubiquitin conjugating enzyme
6 gi|11497064|ref|NP_051167.1| hypothetical protein (BB_P06) [Borrelia burgdorferi B31] 324 PDB0516 169-317 -6.320 12  1y9i_A mol:protein length:178 low temperature requirement C protein
7 gi|11497065|ref|NP_051168.1| hypothetical protein (BB_P07) [Borrelia burgdorferi B31] 153 PDB0516 35-150 -6.230 11  5hp0_A mol:protein length:122 CREB-binding protein,Cellular tumor antigen p
8 gi|11497066|ref|NP_051169.1| hypothetical protein (BB_P08) [Borrelia burgdorferi B31] 133 PDB0516 32-130 -27.100 2kz4_A mol:protein length:112 Putative head-tail adaptor
9 gi|11497067|ref|NP_051170.1| hypothetical protein (BB_P09) [Borrelia burgdorferi B31] 129 PDB0516 1-81 -6.320 2es7_A mol:protein length:142 putative thiol-disulfide isomerase and thiore
10 gi|11497068|ref|NP_051171.1| hypothetical protein (BB_P10) [Borrelia burgdorferi B31] 188 PDB0516 93-188 -6.960 12  5hel_A mol:protein length:126 Bromodomain-containing protein 2
11 gi|11497095|ref|NP_051172.1| hypothetical protein (BB_P11) [Borrelia burgdorferi B31] 370 PDB0516 176-280 -6.380 27  5fhc_J mol:protein length:98 Envelope glycoprotein
12 gi|11497096|ref|NP_051173.1| hypothetical protein (BB_P12) [Borrelia burgdorferi B31] 142 PDB0516 8-120 -7.600 2wff_2 mol:protein length:230 P1
13 gi|11497097|ref|NP_051174.1| hypothetical protein (BB_P13) [Borrelia burgdorferi B31] 151 PDB0516 43-87 -6.250 22  4y91_A mol:protein length:95 RNA-binding protein Hfq
14 gi|11497098|ref|NP_051175.1| hypothetical protein (BB_P14) [Borrelia burgdorferi B31] 78 PDB0516 2-73 -7.390 20  2o8i_A mol:protein length:165 Hypothetical protein Atu2327
15 gi|11497099|ref|NP_051176.1| hypothetical protein (BB_P15) [Borrelia burgdorferi B31] 424 PDB0516 12-132 -9.770 3mtt_A mol:protein length:187 Phosphatidylinositol 3-kinase regulatory subu
16 gi|11497100|ref|NP_051177.1| hypothetical protein (BB_P16) [Borrelia burgdorferi B31] 227 PDB0516 43-227 -7.790 12  2f1x_A mol:protein length:161 HAUSP/USP7
17 gi|11497101|ref|NP_051178.1| hypothetical protein (BB_P17) [Borrelia burgdorferi B31] 316 PDB0516 26-98 -6.560 26  2hj1_A mol:protein length:97 Hypothetical protein
18 gi|11497102|ref|NP_051179.1| hypothetical protein (BB_P18) [Borrelia burgdorferi B31] 181 PDB0516 20-171 -9.770 11  4ru3_A mol:protein length:221 puncturing protein gp41
19 gi|11497069|ref|NP_051180.1| hypothetical protein (BB_P19) [Borrelia burgdorferi B31] 110 PDB0516 14-110 -21.300 18  4hrz_A mol:protein length:134 Tail lysozyme
20 gi|11497070|ref|NP_051181.1| hypothetical protein (BB_P20) [Borrelia burgdorferi B31] 291 PDB0516 44-221 -8.190 15  2jeu_A mol:protein length:209 REGULATORY PROTEIN E2


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.