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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4678next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] (Range: 1-117) 117 COG0516 58-111 -9.620 16  [R] COG4797 Predicted regulatory domain of a methyltransferase
2 gi|60680256|ref|YP_210400.1| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343] (Range: 1-74) 74 COG0516 46-73 -7.810 10  [UR] KOG4677 Golgi integral membrane protein
3 gi|60681449|ref|YP_211593.1| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] (Range: 1-447) 447 COG0516 14-443 -72.900 20  [V] COG0534 Na+-driven multidrug efflux pump
4 gi|60683425|ref|YP_213569.1| 30S ribosomal protein S14 (BF3990) [Bacteroides fragilis NCTC 9343] (Range: 1-99) 99 COG0516 1-99 -77.000 55  [J] COG0199 Ribosomal protein S14
5 gi|60682385|ref|YP_212529.1| putative CTP pyrophosphohydrolase (BF2916) [Bacteroides fragilis NCTC 9343] (Range: 1-130) 130 COG0516 7-113 -31.800 23  [F] COG1051 ADP-ribose pyrophosphatase
6 gi|60680762|ref|YP_210906.1| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343] (Range: 1-110) 110 COG0516 1-58 -11.600 10  [U] COG3702 Type IV secretory pathway, VirB3 components
7 gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] (Range: 1-415) 415 COG0516 3-415 -142.000 53  [O] COG1219 ATP-dependent protease Clp, ATPase subunit
8 gi|60682477|ref|YP_212621.1|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343] (Range: 24-588) 565 COG0516 1-339 -29.900 15  [DO] KOG1173 Anaphase-promoting complex (APC), Cdc16 subunit
8-555 -25.500 12  [Z] KOG1840 Kinesin light chain
62-330 -31.200 [U] KOG1586 Protein required for fusion of vesicles in vesicular transport, alpha-SNAP
9 gi|60681243|ref|YP_211387.1| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343] (Range: 1-157) 157 COG0516 3-132 -7.760 [M] COG3056 Uncharacterized lipoprotein
10 gi|60682315|ref|YP_212459.1| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343] (Range: 1-207) 207 COG0516 68-165 -6.810 20  [R] COG2969 Stringent starvation protein B
11 gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] (Range: 1-311) 311 COG0516 6-309 -49.300 19  [PT] COG3712 Fe2+-dicitrate sensor, membrane component
12 gi|60683563|ref|YP_213707.1| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343] (Range: 1-142) 142 COG0516 1-138 -82.700 34  [R] COG2166 SufE protein probably involved in Fe-S center assembly
13 gi|60682225|ref|YP_212369.1| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343] (Range: 1-225) 225 COG0516 2-225 -74.500 25  [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
14 gi|60682801|ref|YP_212945.1| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343] (Range: 1-388) 388 COG0516 7-372 -31.600 19  [H] KOG2511 Nicotinic acid phosphoribosyltransferase
15 gi|60680875|ref|YP_211019.1| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343] (Range: 1-245) 245 COG0516 4-244 -30.600 13  [M] COG3209 Rhs family protein
16 gi|60682029|ref|YP_212173.1| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343] (Range: 1-599) 599 COG0516 1-346 -61.300 26  [H] COG2073 Cobalamin biosynthesis protein CbiG
357-599 -63.200 45  [H] COG2875 Precorrin-4 methylase
17 gi|60681247|ref|YP_211391.1| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343] (Range: 1-299) 299 COG0516 1-299 -27.400 12  [MOT] KOG1550 Extracellular protein SEL-1 and related proteins
75-299 -28.400 11  [R] COG0790 FOG: TPR repeat, SEL1 subfamily
18 gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] (Range: 1-361) 361 COG0516 307-345 -7.910 21  [J] COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation
19 gi|60681337|ref|YP_211481.1| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343] (Range: 1-71) 71 COG0516 5-66 -4.870 [S] COG5458 Uncharacterized conserved protein
20 gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] (Range: 1-221) 221 COG0516 20-210 -39.700 16  [R] KOG1665 AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.