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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4678next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] (Range: 1-117) 117 JCSG0516 55-117 -12.000 RH20529A YP_562169.1 416452 Selected-2009-12-04
2 gi|60680256|ref|YP_210400.1| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343] (Range: 1-74) 74 JCSG0516 48-68 -7.350 19  GS13154A RER070207003166 384294 Purified-2010-04-01
3 gi|60681449|ref|YP_211593.1| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] (Range: 1-447) 447 JCSG0516 3-443 -92.100 23  TM0815 TM0815 282685 Purified-2004-02-02
4 gi|60683425|ref|YP_213569.1| 30S ribosomal protein S14 (BF3990) [Bacteroides fragilis NCTC 9343] (Range: 1-99) 99 JCSG0516 1-99 -36.300 47  TM1487 TM1487 283344 Purified-2001-11-13
5 gi|60682385|ref|YP_212529.1| putative CTP pyrophosphohydrolase (BF2916) [Bacteroides fragilis NCTC 9343] (Range: 1-130) 130 JCSG0516 2-129 -57.200 22  FN2108E YP_014240.1 379463 Purified-2007-09-25
6 gi|60680762|ref|YP_210906.1| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343] (Range: 1-110) 110 JCSG0516 19-110 -7.570 16  SP17741B ZP_02432375.1 410332 Purified-2010-09-20
7 gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] (Range: 1-415) 415 JCSG0516 7-414 -135.000 49  TM0146 TM0146 282026 Purified-2004-07-19
8 gi|60682477|ref|YP_212621.1|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343] (Range: 24-588) 565 JCSG0516 1-121 -63.300 45  SP16977A ZP_02063442.1 408380 Purified-2010-09-29
22-342 -32.400 13  MA16083B NP_033049.1 400502 Cloned-2009-03-24
66-565 -30.100 TM1314 TM1314 283178 Selected-2001-10-12
9 gi|60681243|ref|YP_211387.1| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343] (Range: 1-157) 157 JCSG0516 1-134 -10.900 SP18611A ZP_03310651.1 410649 Purified-2010-09-29
10 gi|60682315|ref|YP_212459.1| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343] (Range: 1-207) 207 JCSG0516 10-139 -7.350 11  RH12835A NP_951781.1 416445 Selected-2009-12-04
11 gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] (Range: 1-311) 311 JCSG0516 1-311 -98.100 53  RH6518A ZP_02031563.1 415592 Selected-2009-12-04
12 gi|60683563|ref|YP_213707.1| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343] (Range: 1-142) 142 JCSG0516 1-141 -6.320 14  TM1372 TM1372 283233 Purified-2001-11-19
13 gi|60682225|ref|YP_212369.1| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343] (Range: 1-225) 225 JCSG0516 2-225 -91.900 34  TM1655 TM1655 283512 Selected-2001-10-12
14 gi|60682801|ref|YP_212945.1| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343] (Range: 1-388) 388 JCSG0516 2-388 -119.000 32  YOR209C YOR209C 354135 PDB-2004-08-06
15 gi|60680875|ref|YP_211019.1| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343] (Range: 1-245) 245 JCSG0516 1-244 -38.600 11  SP16560A YP_210936.1 407952 Purified-2010-09-29
16 gi|60682029|ref|YP_212173.1| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343] (Range: 1-599) 599 JCSG0516 1-580 -96.000 18  XB5563A 10639946 358701 Purified-2005-05-18
17 gi|60681247|ref|YP_211391.1| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343] (Range: 1-299) 299 JCSG0516 1-290 -10.100 11  GS13640A YP_001088498.1 384046 Purified-2010-04-06
90-299 -36.000 SP2245G ZP_03310339.1 410522 Purified-2010-09-29
219-299 -41.400 17  SP2245M YP_094930.1 412074 Purified-2010-09-29
18 gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] (Range: 1-361) 361 JCSG0516 196-346 -9.110 RH20508A NP_716800.1 416408 Selected-2009-12-04
19 gi|60681337|ref|YP_211481.1| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343] (Range: 1-71) 71 JCSG0516 15-57 -5.570 20  SC.B21098B NP_687844.1 427863 Selected-2013-01-04
20 gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] (Range: 1-221) 221 JCSG0516 22-220 -41.100 15  C.LS4548A NP_420698.1 423807 Selected-2011-09-02


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.