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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4778next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|29345411|ref|NP_808914.1| hypothetical protein BT_0001 [Bacteroides thetaiotaomicron VPI-5482] 205 PDB0516 2-128 -7.510 4nk6_A mol:protein length:491 Poly(beta-D-mannuronate) C5 epimerase
2 gi|29345412|ref|NP_808915.1|(removed signal:1-19) hypothetical protein BT_0002 [Bacteroides thetaiotaomicron VPI-5482] 312 PDB0516 103-246 -9.480 13  5a9d_A mol:protein length:189 SOLUTE CARRIER FAMILY 15 MEMBER 1
3 gi|29345413|ref|NP_808916.1| hypothetical protein BT_0003 [Bacteroides thetaiotaomicron VPI-5482] 258 PDB0516 2-258 -100.000 54  4fmr_A mol:protein length:265 uncharacterized hypothetical protein
4 gi|29345414|ref|NP_808917.1| hypothetical protein BT_0004 [Bacteroides thetaiotaomicron VPI-5482] 222 PDB0516 26-209 -6.800 17  2fwy_A mol:protein length:256 Heat shock protein HSP 90-alpha
5 gi|29345415|ref|NP_808918.1| 30S ribosomal protein S17 BT_0005 [Bacteroides thetaiotaomicron VPI-5482] 178 PDB0516 98-177 -58.900 50  1eg0_G mol:protein length:93 PROTEIN (S17 RIBOSOMAL PROTEIN)
6 gi|29345416|ref|NP_808919.1| hypothetical protein BT_0006 [Bacteroides thetaiotaomicron VPI-5482] 148 PDB0516 9-73 -8.130 21  1wwx_A mol:protein length:107 E74-like factor 5 ESE-2b
7 gi|29345417|ref|NP_808920.1| hypothetical protein BT_0007 [Bacteroides thetaiotaomicron VPI-5482] 130 PDB0516 3-77 -7.890 14  3fby_A mol:protein length:551 Cartilage oligomeric matrix protein
8 gi|29345418|ref|NP_808921.1| hypothetical protein BT_0008 [Bacteroides thetaiotaomicron VPI-5482] 181 PDB0516 4-163 -24.600 1m44_A mol:protein length:181 Aminoglycoside 2`-N-acetyltransferase
9 gi|29345419|ref|NP_808922.1|(removed signal:1-26) phosphate-binding periplasmic protein precursor, putative ABC transporter BT_0009 [Bacteroides thetaiotaomicron VPI-5482] 343 PDB0516 23-342 -122.000 34  1a40_A mol:protein length:321 PHOSPHATE-BINDING PERIPLASMIC PROTEIN PRECURS
10 gi|29345420|ref|NP_808923.1| hypothetical protein BT_0010 [Bacteroides thetaiotaomicron VPI-5482] 357 PDB0516 7-177 -6.720 16  4d7l_A mol:protein length:240 PEPTIDE METHIONINE SULFOXIDE REDUCTASE MSRA
11 gi|29345421|ref|NP_808924.1| hypothetical protein BT_0011 [Bacteroides thetaiotaomicron VPI-5482] 282 PDB0516 195-278 -8.690 26  1mv3_A mol:protein length:213 Myc box dependent interacting protein 1
12 gi|29345422|ref|NP_808925.1|(removed signal:1-34) hypothetical protein BT_0012 [Bacteroides thetaiotaomicron VPI-5482] 354 PDB0516 1-291 -7.740 10  4mr0_A mol:protein length:648 Plasmin and fibronectin-binding protein A
13 gi|29345423|ref|NP_808926.1| hypothetical protein BT_0013 [Bacteroides thetaiotaomicron VPI-5482] 180 PDB0516 19-132 -9.460 13  3ivp_A mol:protein length:126 Putative transposon-related DNA-binding prote
14 gi|29345424|ref|NP_808927.1| two-component system histidine kinase with response regulator receiver domain BT_0014 [Bacteroides thetaiotaomicron VPI-5482] 807 PDB0516 172-554 -37.600 18  4i5s_A mol:protein length:450 Putative histidine kinase CovS; VicK-like pro
295-555 -57.800 25  4q20_A mol:protein length:268 Sensor protein DivL
450-692 -49.300 19  2ayx_A mol:protein length:254 Sensor kinase protein rcsC
15 gi|29345425|ref|NP_808928.1| rteB, two-component system response regulator BT_0015 [Bacteroides thetaiotaomicron VPI-5482] 432 PDB0516 3-432 -115.000 39  4l4u_A mol:protein length:447 Transcriptional regulator (NtrC family)
16 gi|29345426|ref|NP_808929.1| hypothetical protein BT_0016 [Bacteroides thetaiotaomicron VPI-5482] 212 PDB0516 133-212 -6.700 15  1hfe_S mol:protein length:123 PROTEIN (FE-ONLY HYDROGENASE (E.C.1.18.99.1)
17 gi|29345427|ref|NP_808930.1| hypothetical protein BT_0017 [Bacteroides thetaiotaomicron VPI-5482] 315 PDB0516 198-312 -7.970 3j7y_q mol:protein length:222 CRIF1
18 gi|29345428|ref|NP_808931.1| hypothetical protein BT_0018 [Bacteroides thetaiotaomicron VPI-5482] 238 PDB0516 99-146 -7.460 10  1ukf_A mol:protein length:188 Avirulence protein AVRPPH3
19 gi|29345429|ref|NP_808932.1| hypothetical protein BT_0019 [Bacteroides thetaiotaomicron VPI-5482] 106 PDB0516 3-77 -7.100 12  3kt1_A mol:protein length:633 PKHD-type hydroxylase TPA1
20 gi|29345430|ref|NP_808933.1| hypothetical protein BT_0020 [Bacteroides thetaiotaomicron VPI-5482] 152 PDB0516 46-89 -7.260 15  1nrj_A mol:protein length:158 Signal recognition particle receptor alpha su


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.