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anford Burnham Prebys Medical Discovery Institute
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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4778next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|29345411|ref|NP_808914.1| hypothetical protein BT_0001 [Bacteroides thetaiotaomicron VPI-5482] 205 VFDB 1-128 -8.220 10  VFG000127(gi:15598741) (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
2 gi|29345412|ref|NP_808915.1|(removed signal:1-19) hypothetical protein BT_0002 [Bacteroides thetaiotaomicron VPI-5482] 312 VFDB 103-261 -6.410 VFG000132(gi:15598746) (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
3 gi|29345413|ref|NP_808916.1| hypothetical protein BT_0003 [Bacteroides thetaiotaomicron VPI-5482] 258 VFDB 95-219 -8.790 12  VFG001437(gi:4836791) (cseA) CS22 adhesin protein [Adhesive fimbriae (VF0213)] [Escherichia coli str. ARG-3]
4 gi|29345414|ref|NP_808917.1| hypothetical protein BT_0004 [Bacteroides thetaiotaomicron VPI-5482] 222 VFDB 2-149 -6.520 19  VFG000762(gi:215276207) (bfpL) BFP biogenesis protein BfpL [BFP (VF0174)] [Escherichia coli O127:H6 str. E2348/69]
5 gi|29345415|ref|NP_808918.1| 30S ribosomal protein S17 BT_0005 [Bacteroides thetaiotaomicron VPI-5482] 178 VFDB 100-145 -7.230 13  VFG042860(gi:52840864) (pilE3) type IV pilus pilin [type IV pili (AI111)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
6 gi|29345416|ref|NP_808919.1| hypothetical protein BT_0006 [Bacteroides thetaiotaomicron VPI-5482] 148 VFDB 1-131 -7.270 16  VFG002066(gi:15595278) (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
7 gi|29345417|ref|NP_808920.1| hypothetical protein BT_0007 [Bacteroides thetaiotaomicron VPI-5482] 130 VFDB 6-125 -5.270 20  VFG001959(gi:15792749) (hddC) capsular polysaccharide heptosyltransferase [Capsule (VF0323)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
8 gi|29345418|ref|NP_808921.1| hypothetical protein BT_0008 [Bacteroides thetaiotaomicron VPI-5482] 181 VFDB 2-177 -24.500 11  VFG045514(gi:52841381) (lpg1147) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
9 gi|29345419|ref|NP_808922.1|(removed signal:1-26) phosphate-binding periplasmic protein precursor, putative ABC transporter BT_0009 [Bacteroides thetaiotaomicron VPI-5482] 343 VFDB 3-323 -7.300 13  VFG001205(gi:15676534) (fbpA) iron(III) ABC transporter, periplasmic binding protein [FbpABC (VF0272)] [Neisseria meningitidis MC58]
10 gi|29345420|ref|NP_808923.1| hypothetical protein BT_0010 [Bacteroides thetaiotaomicron VPI-5482] 357 VFDB 14-193 -5.890 17  VFG021840(gi:15608487) (mbtK) Lysine N-acetyltransferase MbtK [mycobactin (IA031)] [Mycobacterium tuberculosis H37Rv]
11 gi|29345421|ref|NP_808924.1| hypothetical protein BT_0011 [Bacteroides thetaiotaomicron VPI-5482] 282 VFDB 211-279 -7.960 16  VFG000743(gi:2865303) (espD) EspD [EspD (VF0180)] [Escherichia coli O127:H6 str. E2348/69]
12 gi|29345422|ref|NP_808925.1|(removed signal:1-34) hypothetical protein BT_0012 [Bacteroides thetaiotaomicron VPI-5482] 354 VFDB 1-291 -5.960 10  VFG043465(gi:15903694) (pfbA) cell wall surface anchor family protein, Plasminogen- and Fibronectin-binding protein A [PfbA (VF0525)] [Streptococcus pneumoniae R6]
13 gi|29345423|ref|NP_808926.1| hypothetical protein BT_0013 [Bacteroides thetaiotaomicron VPI-5482] 180 VFDB 11-180 -5.690 12  VFG002061(gi:15595273) (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
14 gi|29345424|ref|NP_808927.1| two-component system histidine kinase with response regulator receiver domain BT_0014 [Bacteroides thetaiotaomicron VPI-5482] 807 VFDB 192-547 -31.800 15  VFG001213(gi:15599742) (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
300-561 -36.400 25  VFG009810(gi:15607898) (phoR) Possible two component system response sensor kinase membrane associated PhoR [PhoP/R (CVF331)] [Mycobacterium tuberculosis H37Rv]
549-788 -18.900 16  VFG001386(gi:15607897) (phoP) Possible two component system response transcriptional positive regulator PhoP [PhoP (VF0286)] [Mycobacterium tuberculosis H37Rv]
569-691 -29.800 21  VFG002532(gi:53720917) (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
15 gi|29345425|ref|NP_808928.1| rteB, two-component system response regulator BT_0015 [Bacteroides thetaiotaomicron VPI-5482] 432 VFDB 2-432 -117.000 34  VFG001249(gi:15596296) (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
16 gi|29345426|ref|NP_808929.1| hypothetical protein BT_0016 [Bacteroides thetaiotaomicron VPI-5482] 212 VFDB 135-205 -7.860 17  VFG001208(gi:15599748) (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
17 gi|29345427|ref|NP_808930.1| hypothetical protein BT_0017 [Bacteroides thetaiotaomicron VPI-5482] 315 VFDB 146-315 -5.530 VFG000137(gi:15598356) (wzz) positive regulator for alginate biosynthesis MucC [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
18 gi|29345428|ref|NP_808931.1| hypothetical protein BT_0018 [Bacteroides thetaiotaomicron VPI-5482] 238 VFDB 1-238 -5.840 10  VFG001348(gi:22537329) (cpsE) glycosyl transferase CpsE [Capsule (VF0274)] [Streptococcus agalactiae 2603V/R]
19 gi|29345429|ref|NP_808932.1| hypothetical protein BT_0019 [Bacteroides thetaiotaomicron VPI-5482] 106 VFDB 1-104 -6.300 14  VFG006622(gi:15645389) (flhB) flagellar biosynthesis protein [Pse5Ac7Ac (AI150)] [Helicobacter pylori 26695]
20 gi|29345430|ref|NP_808933.1| hypothetical protein BT_0020 [Bacteroides thetaiotaomicron VPI-5482] 152 VFDB 1-152 -5.580 VFG001979(gi:32469830) (virB11) Type IV secretion system protein VirB11 [Type IV secretion system (VF0325)] [Campylobacter jejuni subsp. jejuni 81-176]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.