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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4053next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15894240|ref|NP_347589.1| hypothetical protein (CA_C0953) [Clostridium acetobutylicum ATCC 824] (Range: 1-132) 132 PDB0516 26-132 -8.670 10  3kwt_A mol:protein length:148 Munc13-1
2 gi|15895268|ref|NP_348617.1| ABC-type transport system, ATPase component (CA_C1998) [Clostridium acetobutylicum ATCC 824] (Range: 1-224) 224 PDB0516 4-224 -112.000 48  3tif_A mol:protein length:235 Uncharacterized ABC transporter ATP-binding p
3 gi|15895079|ref|NP_348428.1| ribosome-binding factor A (CA_C1803) [Clostridium acetobutylicum ATCC 824] (Range: 1-121) 121 PDB0516 1-118 -64.500 19  1pa4_A mol:protein length:116 Probable ribosome-binding factor A
4 gi|15896238|ref|NP_349587.1| dimethyladenosine transferase (CA_C2986) [Clostridium acetobutylicum ATCC 824] (Range: 1-276) 276 PDB0516 2-276 -110.000 34  3grr_A mol:protein length:295 Dimethyladenosine transferase
5 gi|15894673|ref|NP_348022.1| phosphoribosylglycinamide formyltransferase (CA_C1394) [Clostridium acetobutylicum ATCC 824] (Range: 1-204) 204 PDB0516 1-204 -89.300 50  2ywr_A mol:protein length:216 Phosphoribosylglycinamide formyltransferase
6 gi|15894664|ref|NP_348013.1| Alpha-ribazole-5'-phosphate phosphatase, CobC (CA_C1385) [Clostridium acetobutylicum ATCC 824] (Range: 1-191) 191 PDB0516 1-191 -97.600 29  4ij5_A mol:protein length:211 Phosphoserine phosphatase 1
7 gi|15894369|ref|NP_347718.1| Beta-glucosidase family protein (CA_C1084) [Clostridium acetobutylicum ATCC 824] (Range: 1-474) 474 PDB0516 2-471 -138.000 40  3pn8_A mol:protein length:480 Putative phospho-beta-glucosidase
8 gi|15896898|ref|NP_350247.1| alpha/beta fold family hydrolase (CA_C3665) [Clostridium acetobutylicum ATCC 824] (Range: 1-265) 265 PDB0516 8-264 -80.800 28  2wtm_A mol:protein length:251 EST1E
9 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 1-500) 500 PDB0516 1-500 -131.000 29  3u44_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subu
10 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 251-750) 500 PDB0516 1-500 -122.000 30  3u44_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subu
11 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 501-1000) 500 PDB0516 1-500 -150.000 32  3u44_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subu
12 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 751-1153) 403 PDB0516 1-399 -121.000 35  3u44_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subu
13 gi|15895492|ref|NP_348841.1| chemotaxis protein CheW (CA_C2224) [Clostridium acetobutylicum ATCC 824] (Range: 1-147) 147 PDB0516 2-147 -76.200 32  2ho9_A mol:protein length:167 Chemotaxis protein cheW
14 gi|15894672|ref|NP_348021.1| phosphoribosylaminoimidazole synthetase (CA_C1393) [Clostridium acetobutylicum ATCC 824] (Range: 1-332) 332 PDB0516 2-331 -122.000 49  1cli_A mol:protein length:345 PROTEIN (PHOSPHORIBOSYL-AMINOIMIDAZOLE SYNTHE
15 gi|15893880|ref|NP_347229.1| riboflavin synthase subunit alpha (CA_C0591) [Clostridium acetobutylicum ATCC 824] (Range: 1-213) 213 PDB0516 1-201 -97.500 35  1kzl_A mol:protein length:208 Riboflavin Synthase
16 gi|15893578|ref|NP_346927.1| hypothetical protein (CA_C0286) [Clostridium acetobutylicum ATCC 824] (Range: 1-244) 244 PDB0516 10-185 -7.860 3jbr_E mol:protein length:222 Voltage-dependent calcium channel gamma-1 sub
17 gi|15896862|ref|NP_350211.1| oligopeptide ABC transporter, ATPase component (CA_C3628) [Clostridium acetobutylicum ATCC 824] (Range: 1-322) 322 PDB0516 8-322 -101.000 32  4fwi_B mol:protein length:334 ABC-type dipeptide/oligopeptide/nickel transp
18 gi|15895331|ref|NP_348680.1| segregation and condensation protein A (CA_C2061) [Clostridium acetobutylicum ATCC 824] (Range: 1-249) 249 PDB0516 1-163 -77.000 41  3w6j_A mol:protein length:174 ScpA
163-243 -17.800 19  4i99_C mol:protein length:87 Putative uncharacterized protein
19 gi|15894096|ref|NP_347445.1| hydrogenase formation factor (hypE) (CA_C0809) [Clostridium acetobutylicum ATCC 824] (Range: 1-335) 335 PDB0516 2-335 -114.000 46  2z1t_A mol:protein length:343 Hydrogenase expression/formation protein HypE
20 gi|15895945|ref|NP_349294.1| DNA helicase (CA_C2687) [Clostridium acetobutylicum ATCC 824] (Range: 1-714) 714 PDB0516 1-663 -27.000 13  5a9j_A mol:protein length:896 DNA POLYMERASE THETA
3-516 -138.000 39  4tmu_A mol:protein length:541 RecQ
3-605 -134.000 33  4cdg_A mol:protein length:673 BLOOM SYNDROME PROTEIN
591-713 -25.800 16  3iuo_A mol:protein length:122 ATP-dependent DNA helicase RecQ


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.