current user: public

anford Burnham Prebys Medical Discovery Institute
Please be advised that due to the planned maintenance our websites might be temporarily unavailable on December 17-18, 2018. We apologise for the inconvenience that this may cause.

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 3877next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 ACL93468.1 301 COG0516 25-295 -78.300 29  [S] COG1806 Uncharacterized protein conserved in bacteria
2 ACL93469.1 199 COG0516 3-197 -97.600 45  [D] COG0424 Nucleotide-binding protein implicated in inhibition of septum formation
3 ACL93470.1 285 COG0516 5-285 -87.500 34  [E] COG0169 Shikimate 5-dehydrogenase
4 ACL93471.1 199 COG0516 2-193 -88.000 38  [H] COG0237 Dephospho-CoA kinase
5 ACL93472.1 237 COG0516 1-229 -110.000 36  [L] COG0847 DNA polymerase III, epsilon subunit and related 3`-5` exonucleases
6 ACL93473.1 262 COG0516 7-262 -121.000 49  [I] KOG1680 Enoyl-CoA hydratase
7 ACL93474.1 96 COG0516 6-92 -55.500 33  [J] COG0268 Ribosomal protein S20
8 ACL93475.1 490 COG0516 22-490 -128.000 32  [L] COG0593 ATPase involved in DNA replication initiation
9 ACL93476.1 206 COG0516 6-206 -101.000 52  [L] COG3145 Alkylated DNA repair protein
10 ACL93477.1 631 COG0516 1-630 -191.000 59  [O] COG0443 Molecular chaperone
11 ACL93478.1 385 COG0516 1-380 -135.000 45  [O] COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain
12 ACL93479.1 903 COG0516 15-901 -189.000 34  [L] COG0249 Mismatch repair ATPase (MutS family)
13 ACL93480.1 940 COG0516 10-922 -207.000 27  [O] COG2844 UTP:GlnB (protein PII) uridylyltransferase
14 ACL93481.1 158 COG0516 1-156 -104.000 60  [H] COG0315 Molybdenum cofactor biosynthesis enzyme
15 ACL93482.1 183 COG0516 7-183 -15.900 20  [EH] KOG2644 3`-phosphoadenosine 5`-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes
19-163 -42.100 23  [H] COG0521 Molybdopterin biosynthesis enzymes
16 ACL93483.1 150 COG0516 1-146 -89.200 44  [H] COG0314 Molybdopterin converting factor, large subunit
17 ACL93484.1 79 COG0516 2-79 -18.000 26  [H] COG1977 Molybdopterin converting factor, small subunit
18 ACL93485.1 349 COG0516 9-349 -126.000 66  [H] COG2896 Molybdenum cofactor biosynthesis enzyme
19 ACL93486.1 210 COG0516 1-209 -76.200 31  [R] COG2068 Uncharacterized MobA-related protein
20 ACL93487.1 74 COG0516 13-65 -6.570 20  [G] COG4806 L-rhamnose isomerase


FFAS is supported by the NIH grant R01-GM087218-01
1 2 0 3 0 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.