current user: public

anford Burnham Prebys Medical Discovery Institute
Please be advised that due to the planned maintenance our websites might be temporarily unavailable on December 17-18, 2018. We apologise for the inconvenience that this may cause.

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 3877next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 ACL93468.1 301 PDB0516 24-299 -92.900 34  5d0n_A mol:protein length:413 Pyruvate, phosphate dikinase regulatory prote
2 ACL93469.1 199 PDB0516 1-199 -78.900 29  4jhc_A mol:protein length:215 Maf-like protein YceF
3 ACL93470.1 285 PDB0516 11-285 -97.100 30  3don_A mol:protein length:277 Shikimate dehydrogenase
4 ACL93471.1 199 PDB0516 1-199 -92.600 34  1uf9_A mol:protein length:203 TT1252 protein
5 ACL93472.1 237 PDB0516 1-229 -112.000 39  5fku_D mol:protein length:243 DNA POLYMERASE III SUBUNIT EPSILON
6 ACL93473.1 262 PDB0516 2-261 -122.000 57  1dub_A mol:protein length:261 2-ENOYL-COA HYDRATASE
7 ACL93474.1 96 PDB0516 1-96 -55.800 26  1fjg_T mol:protein length:106 30S RIBOSOMAL PROTEIN S20
8 ACL93475.1 490 PDB0516 26-490 -114.000 25  2z4r_A mol:protein length:440 Chromosomal replication initiator protein dna
9 ACL93476.1 206 PDB0516 5-206 -103.000 38  4nig_A mol:protein length:205 Alpha-ketoglutarate-dependent dioxygenase Alk
10 ACL93477.1 631 PDB0516 1-600 -198.000 66  2kho_A mol:protein length:605 Heat shock protein 70
1-631 -118.000 25  3d2e_A mol:protein length:675 Heat shock protein homolog SSE1
11 ACL93478.1 385 PDB0516 2-369 -81.200 35  3lz8_A mol:protein length:329 Putative chaperone DnaJ
12 ACL93479.1 903 PDB0516 3-903 -161.000 22  2o8b_A mol:protein length:934 DNA mismatch repair protein Msh2
10-841 -211.000 37  1e3m_A mol:protein length:800 DNA MISMATCH REPAIR PROTEIN MUTS
13 ACL93480.1 940 PDB0516 15-321 -15.800 16  3k7d_A mol:protein length:498 Glutamate-ammonia-ligase adenylyltransferase
215-632 -23.000 20  3wfo_A mol:protein length:525 Poly A polymerase
464-679 -10.800 15  2pq7_A mol:protein length:220 Predicted HD superfamily hydrolase
738-918 -10.600 16  2nyi_A mol:protein length:195 unknown protein
14 ACL93481.1 158 PDB0516 1-157 -105.000 59  1ekr_A mol:protein length:161 MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN C
15 ACL93482.1 183 PDB0516 12-181 -101.000 41  1mkz_A mol:protein length:172 Molybdenum cofactor biosynthesis protein B
16 ACL93483.1 150 PDB0516 1-146 -89.300 45  1fm0_E mol:protein length:150 MOLYBDOPTERIN CONVERTING FACTOR, SUBUNIT 2
17 ACL93484.1 79 PDB0516 1-79 -53.800 29  1fm0_D mol:protein length:81 MOLYBDOPTERIN CONVERTING FACTOR, SUBUNIT 1
18 ACL93485.1 349 PDB0516 20-349 -101.000 33  1tv7_A mol:protein length:340 Molybdenum cofactor biosynthesis protein A
19 ACL93486.1 210 PDB0516 5-209 -78.000 27  2we9_A mol:protein length:197 MOBA-RELATED PROTEIN
20 ACL93487.1 74 PDB0516 13-65 -6.410 15  3p14_A mol:protein length:424 L-rhamnose isomerase


FFAS is supported by the NIH grant R01-GM087218-01
1 2 0 3 0 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.