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anford Burnham Prebys Medical Discovery Institute
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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 3877next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 ACL93468.1 301 VFDB 54-294 -5.050 14  VFG000756(gi:6009386) (bfpF) retraction ATPase BfpF [BFP (VF0174)] [Escherichia coli B171]
2 ACL93469.1 199 VFDB 37-97 -5.160 14  VFG022066(gi:57116715) (PE5) PE family protein [ESX-3 (VF0521)] [Mycobacterium tuberculosis H37Rv]
3 ACL93470.1 285 VFDB 131-248 -7.830 17  VFG000361(gi:16122157) (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
4 ACL93471.1 199 VFDB 1-188 -8.990 16  VFG000274(gi:15644698) (ureG) urease accessory protein (ureG) [Urease (VF0050)] [Helicobacter pylori 26695]
5 ACL93472.1 237 VFDB 47-158 -6.500 12  VFG002367(gi:123443285) (wbcH) putative glycosyltransferase [O-antigen (VF0392)] [Yersinia enterocolitica subsp. enterocolitica 8081]
6 ACL93473.1 262 VFDB 19-248 -4.760 15  VFG006672(gi:15646029) (fliI) flagellum-specific ATP synthase FliI [Pse5Ac7Ac (AI150)] [Helicobacter pylori 26695]
7 ACL93474.1 96 VFDB 14-84 -5.650 12  VFG000756(gi:6009386) (bfpF) retraction ATPase BfpF [BFP (VF0174)] [Escherichia coli B171]
8 ACL93475.1 490 VFDB 106-439 -7.080 12  VFG002401(gi:15608935) (eccA5) ESX-5 type VII secretion system AAA+ ATPase EccA5 [ESX-5 (VF0402)] [Mycobacterium tuberculosis H37Rv]
9 ACL93476.1 206 VFDB 10-206 -7.080 15  VFG045497(gi:52840760) (legD2) Dot/Icm type IV secretion system effector LegD2 [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
10 ACL93477.1 631 VFDB 3-399 -9.250 16  VFG010479(gi:52841162) (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI111)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
11 ACL93478.1 385 VFDB 2-352 -4.790 12  VFG006191(gi:15678016) (pilQ) type IV pilus secretin protein PilQ [Type IV pili (CVF189)] [Neisseria meningitidis MC58]
12 ACL93479.1 903 VFDB 646-843 -7.950 14  VFG001895(gi:15791456) (flhF) flagellar biosynthesis regulator FlhF [Flagella (VF0114)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
13 ACL93480.1 940 VFDB 14-664 -16.500 VFG018236(gi:52842672) (sidM/drrA) Dot/Icm type IV secretion system effector DrrA/SidM guanine nucleotide exchange factor (GEF) [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
14 ACL93481.1 158 VFDB 4-151 -5.540 10  VFG005794(gi:22536840) (cylK) putative phosphopantetheinyl transferase CylK [Beta-hemolysin/cytolysin (CVF171)] [Streptococcus agalactiae 2603V/R]
15 ACL93482.1 183 VFDB 21-153 -6.410 12  VFG000962(gi:15675933) (hasA) hyaluronate synthase [Hyaluronic acid capsule (VF0244)] [Streptococcus pyogenes M1 GAS]
16 ACL93483.1 150 VFDB 1-117 -4.800 16  VFG000119(gi:15600454) (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
17 ACL93484.1 79 VFDB 1-75 -4.130 VFG043518(gi:29134931) (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
18 ACL93485.1 349 VFDB 29-325 -14.700 15  VFG000919(gi:26250136) (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
19 ACL93486.1 210 VFDB 9-206 -20.800 14  VFG001989(gi:15792734) (Cj1416c) sugar nucleotidyltransferase [Capsule (VF0323)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
20 ACL93487.1 74 VFDB 19-64 -5.390 15  VFG045466(gi:23501622) (btpB) Tir domain containing protein BtpB [BtpB (VF0522)] [Brucella suis 1330]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.