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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 968next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15604718|ref|NP_219502.1| hypothetical protein (CT875) [Chlamydia trachomatis D/UW-3/CX] 591 PDB0516 1-389 -6.360 14  1j6u_A mol:protein length:469 UDP-N-acetylmuramate-alanine ligase MurC
2 gi|15604719|ref|NP_219503.1| hypothetical protein (CT001) [Chlamydia trachomatis D/UW-3/CX] 90 PDB0516 2-49 -8.120 12  4x5m_A mol:protein length:100 Uncharacterized protein
3 gi|15604720|ref|NP_219504.1| aspartyl/glutamyl-tRNA amidotransferase subunit C (CT002) [Chlamydia trachomatis D/UW-3/CX] 100 PDB0516 3-100 -57.800 26  2df4_C mol:protein length:100 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfer
4 gi|15604721|ref|NP_219505.1| aspartyl/glutamyl-tRNA amidotransferase subunit A (CT003) [Chlamydia trachomatis D/UW-3/CX] 491 PDB0516 1-481 -154.000 44  2df4_A mol:protein length:485 Glutamyl-tRNA(Gln) amidotransferase subunit A
5 gi|15604722|ref|NP_219506.1| aspartyl/glutamyl-tRNA amidotransferase subunit B (CT004) [Chlamydia trachomatis D/UW-3/CX] 488 PDB0516 6-487 -166.000 41  2df4_B mol:protein length:483 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfer
6 gi|15604723|ref|NP_219507.1| hypothetical protein (CT005) [Chlamydia trachomatis D/UW-3/CX] 363 PDB0516 15-138 -9.340 20  4rfs_S mol:protein length:203 Substrate binding pritein S
7 gi|15604724|ref|NP_219508.1| hypothetical protein (CT006) [Chlamydia trachomatis D/UW-3/CX] 189 PDB0516 29-140 -8.540 11  2ksr_A mol:protein length:164 Neuronal acetylcholine receptor subunit beta-
8 gi|15604725|ref|NP_219509.1| hypothetical protein (CT007) [Chlamydia trachomatis D/UW-3/CX] 316 PDB0516 3-316 -14.300 1t16_A mol:protein length:427 Long-chain fatty acid transport protein
36-316 -22.400 2f1c_X mol:protein length:286 Outer membrane protein G
9 gi|15604726|ref|NP_219510.1| ribonuclease HIII (CT008) [Chlamydia trachomatis D/UW-3/CX] 300 PDB0516 3-300 -102.000 26  2d0a_A mol:protein length:310 ribonuclease HIII
10 gi|15604727|ref|NP_219511.1| HTH transcriptional regulator (CT009) [Chlamydia trachomatis D/UW-3/CX] 143 PDB0516 9-136 -52.000 20  3fym_A mol:protein length:130 Putative uncharacterized protein
11 gi|15604728|ref|NP_219512.1| lipid A biosynthesis lauroyl acyltransferase (CT010) [Chlamydia trachomatis D/UW-3/CX] 455 PDB0516 10-330 -63.000 16  5f2t_A mol:protein length:308 Phosphatidylinositol mannoside acyltransferas
12 gi|15604729|ref|NP_219513.1| hypothetical protein (CT011) [Chlamydia trachomatis D/UW-3/CX] 418 PDB0516 30-251 -36.800 4qdy_A mol:protein length:227 conserved hypothetical protein
13 gi|15604730|ref|NP_219514.1| hypothetical protein (CT012) [Chlamydia trachomatis D/UW-3/CX] 264 PDB0516 43-232 -82.100 32  2fb5_A mol:protein length:205 hypothetical Membrane Spanning Protein
78-256 -83.500 35  4rv7_A mol:protein length:192 Diadenylate cyclase
14 gi|15604731|ref|NP_219515.1| cytochrome d ubiquinol oxidase subunit I (CT013) [Chlamydia trachomatis D/UW-3/CX] 446 PDB0516 1-445 -114.000 28  5doq_A mol:protein length:448 Bd-type quinol oxidase subunit I
15 gi|15604732|ref|NP_219516.1| cytochrome d ubiquinol oxidase subunit II (CT014) [Chlamydia trachomatis D/UW-3/CX] 353 PDB0516 8-348 -68.600 17  5doq_B mol:protein length:342 Bd-type quinol oxidase subunit II
16 gi|15604733|ref|NP_219517.1| ATPase (CT015) [Chlamydia trachomatis D/UW-3/CX] 434 PDB0516 2-140 -34.200 19  2dok_A mol:protein length:186 Telomerase-binding protein EST1A
222-422 -50.400 32  3b85_A mol:protein length:208 Phosphate starvation-inducible protein
17 gi|15604734|ref|NP_219518.1| hypothetical protein (CT016) [Chlamydia trachomatis D/UW-3/CX] 242 PDB0516 126-236 -9.450 20  4hr9_A mol:protein length:122 Interleukin-17A
18 gi|15604735|ref|NP_219519.1| hypothetical protein (CT017) [Chlamydia trachomatis D/UW-3/CX] 433 PDB0516 27-417 -31.200 11  3h41_A mol:protein length:311 NLP/P60 family protein
19 gi|15604736|ref|NP_219520.1| hypothetical protein (CT018) [Chlamydia trachomatis D/UW-3/CX] 157 PDB0516 17-103 -7.100 3sb4_A mol:protein length:329 Hypothetical leucine rich repeat protein
20 gi|15604737|ref|NP_219521.1| isoleucyl-tRNA synthetase (CT019) [Chlamydia trachomatis D/UW-3/CX] (Range: 1-500) 500 PDB0516 5-500 -126.000 42  1ile_A mol:protein length:821 ISOLEUCYL-TRNA SYNTHETASE


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.