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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 968next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15604718|ref|NP_219502.1| hypothetical protein (CT875) [Chlamydia trachomatis D/UW-3/CX] 591 PfamA30U 392-444 -5.530 22  PF01194.15; RPON_METLZ/1-58; RNA polymerases N / 8 kDa subunit
2 gi|15604719|ref|NP_219503.1| hypothetical protein (CT001) [Chlamydia trachomatis D/UW-3/CX] 90 PfamA30U 4-63 -39.400 20  PF04070.10; R5JWM3_9CLOT/4-61; Domain of unknown function (DUF378 topsan)
3 gi|15604720|ref|NP_219504.1| aspartyl/glutamyl-tRNA amidotransferase subunit C (CT002) [Chlamydia trachomatis D/UW-3/CX] 100 PfamA30U 23-95 -39.500 15  PF02686.13; F0SQ10_RUBBR/21-91; Glu-tRNAGln amidotransferase C subunit
4 gi|15604721|ref|NP_219505.1| aspartyl/glutamyl-tRNA amidotransferase subunit A (CT003) [Chlamydia trachomatis D/UW-3/CX] 491 PfamA30U 22-462 -42.900 21  PF01425.19; AMDS_ASPOR/74-533; Amidase
5 gi|15604722|ref|NP_219506.1| aspartyl/glutamyl-tRNA amidotransferase subunit B (CT004) [Chlamydia trachomatis D/UW-3/CX] 488 PfamA30U 11-297 -128.000 43  PF02934.13; Q11V48_CYTH3/11-295; GatB/GatE catalytic domain
336-485 -64.400 42  PF02637.16; GATB_GEOKA/326-473; GatB domain
6 gi|15604723|ref|NP_219507.1| hypothetical protein (CT005) [Chlamydia trachomatis D/UW-3/CX] 363 PfamA30U 4-148 -9.750 11  PF02632.12; D1YVH9_METPS/34-176; BioY family
7 gi|15604724|ref|NP_219508.1| hypothetical protein (CT006) [Chlamydia trachomatis D/UW-3/CX] 189 PfamA30U 18-161 -8.930 11  PF03839.14; U3IKN1_ANAPL/87-308; Translocation protein Sec62
8 gi|15604725|ref|NP_219509.1| hypothetical protein (CT007) [Chlamydia trachomatis D/UW-3/CX] 316 PfamA30U 1-316 -26.600 PF09381.8; OMPG_ECOLI/1-301; Outer membrane protein G (OmpG)
9 gi|15604726|ref|NP_219510.1| ribonuclease HIII (CT008) [Chlamydia trachomatis D/UW-3/CX] 300 PfamA30U 4-79 -27.900 16  PF11858.6; RNH3_OCEIH/3-77; Domain of unknown function (DUF3378 topsan)
89-291 -58.800 17  PF01351.16; RNH2A_SCHPO/66-277; Ribonuclease HII
10 gi|15604727|ref|NP_219511.1| HTH transcriptional regulator (CT009) [Chlamydia trachomatis D/UW-3/CX] 143 PfamA30U 13-83 -38.200 25  PF12844.5; Q03EQ2_PEDPA/10-80; Helix-turn-helix domain
11 gi|15604728|ref|NP_219512.1| lipid A biosynthesis lauroyl acyltransferase (CT010) [Chlamydia trachomatis D/UW-3/CX] 455 PfamA30U 5-316 -62.100 20  PF03279.11; LPXL_HAEIN/6-300; Bacterial lipid A biosynthesis acyltransferase
12 gi|15604729|ref|NP_219513.1| hypothetical protein (CT011) [Chlamydia trachomatis D/UW-3/CX] 418 PfamA30U 142-226 -17.200 18  PF07949.10; Q63H46_BACCZ/240-319; YbbR-like protein
13 gi|15604730|ref|NP_219514.1| hypothetical protein (CT012) [Chlamydia trachomatis D/UW-3/CX] 264 PfamA30U 109-230 -68.100 39  PF02457.14; Q3A5V7_PELCD/116-235; DisA bacterial checkpoint controller nucleotide-binding
14 gi|15604731|ref|NP_219515.1| cytochrome d ubiquinol oxidase subunit I (CT013) [Chlamydia trachomatis D/UW-3/CX] 446 PfamA30U 6-435 -119.000 29  PF01654.15; D7BPD8_ARCHD/6-476; Cytochrome bd terminal oxidase subunit I
15 gi|15604732|ref|NP_219516.1| cytochrome d ubiquinol oxidase subunit II (CT014) [Chlamydia trachomatis D/UW-3/CX] 353 PfamA30U 9-343 -113.000 26  PF02322.13; C6X9F9_METGS/10-365; Cytochrome bd terminal oxidase subunit II
16 gi|15604733|ref|NP_219517.1| ATPase (CT015) [Chlamydia trachomatis D/UW-3/CX] 434 PfamA30U 5-138 -53.800 23  PF13638.4; D2R0J2_PIRSD/11-151; PIN domain
222-428 -50.100 31  PF02562.14; A0LK93_SYNFM/124-328; PhoH-like protein
17 gi|15604734|ref|NP_219518.1| hypothetical protein (CT016) [Chlamydia trachomatis D/UW-3/CX] 242 PfamA30U 148-228 -8.410 21  PF06083.9; G3VTK4_SARHA/102-190; Interleukin-17
18 gi|15604735|ref|NP_219519.1| hypothetical protein (CT017) [Chlamydia trachomatis D/UW-3/CX] 433 PfamA30U 42-96 -13.500 23  PF06347.11; Q2YQQ5_BRUA2/49-105; Bacterial SH3 domain
101-169 -17.200 17  PF08239.9; E9IE92_SOLIN/305-375; Bacterial SH3 domain
19 gi|15604736|ref|NP_219520.1| hypothetical protein (CT018) [Chlamydia trachomatis D/UW-3/CX] 157 PfamA30U 26-115 -6.530 15  PF02654.13; K8GFP9_9CYAN/25-259; Cobalamin-5-phosphate synthase
20 gi|15604737|ref|NP_219521.1| isoleucyl-tRNA synthetase (CT019) [Chlamydia trachomatis D/UW-3/CX] (Range: 1-500) 500 PfamA30U 18-465 -43.700 23  PF00133.20; SYV_YEAST/156-780; tRNA synthetases class I (I, L, M and V)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.