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# Query Length Result vs. Range Score %id Covered by template(s)
1 [H] COG0001 Glutamate-1-semialdehyde aminotransferase 411 COG0516 12-411 -43.300 24  [E] COG4992 Ornithine/acetylornithine aminotransferase
H.sapiens 18-411 -38.100 23  sp|Q9BYV1|AGT2_HUMAN(removed signalp:1-24) Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Homo sapiens GN=AGXT2 PE=1 SV=1
HGM_OVER 259-405 -3.560 11  PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152
JCSG0516 9-411 -42.800 27  TM1785 TM1785 283638 PDB-2007-02-02
NEW_HUMAN_DOMAINS 165-238 -5.530 25  sp|Q86UD0|CI140_HUMAN Protein C9orf140 OS=Homo sapiens GN=C9orf140 PE=2 SV=2 (Range: 24-106)
PDB0516 1-411 -134.000 84  2cfb_A mol:protein length:411 GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE
PfamA30U 16-408 -44.200 27  PF00202.19; Y2045_BACPE/19-432; Aminotransferase class-III
SCOP206 1-411 -129.000 43  d2epja_ c.67.1.0 (A:) automated matches {Aeropyrum pernix [TaxId: 272557]}
VFDB 5-411 -38.400 25  VFG016046(gi:15597609) (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
2 [E] COG0002 Acetylglutamate semialdehyde dehydrogenase 336 COG0516 1-331 -102.000 32  [E] KOG4354 N-acetyl-gamma-glutamyl-phosphate reductase
H.sapiens 2-199 -8.080 15  sp|Q9UDR5|AASS_HUMAN Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Homo sapiens GN=AASS PE=1 SV=1 (Range: 451-750)
HGM_OVER 18-307 -2.860 11  PB076697 gi|160881556|ref|YP_001560524.1| hypothetical protein Cphy_3432 [Clostridium phytofermentans ISDg]gi|160430222|gb|ABX43785.1| conserved hypothetical protein [Clostridium phytofermentans ISDg]
JCSG0516 1-336 -115.000 42  TM1782 TM1782 283635 PDB-2004-06-11
NEW_HUMAN_DOMAINS 162-254 -6.190 sp|C9J069|CI172_HUMAN Uncharacterized protein C9orf172 OS=Homo sapiens GN=C9orf172 PE=3 SV=1 (Range: 869-976)
PDB0516 1-336 -118.000 39  1xyg_A mol:protein length:359 putative N-acetyl-gamma-glutamyl-phosphate re
PfamA30U 3-135 -18.400 21  PF01118.22; DHAS_YEAST/6-132; Semialdehyde dehydrogenase, NAD binding domain
SCOP206 1-180 -64.500 37  d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}
144-304 -84.000 35  d2cvoa2 d.81.1.1 (A:219-383) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}
VFDB 1-225 -10.200 12  VFG002557(gi:53720407) (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
3 [P] COG0003 Oxyanion-translocating ATPase 396 COG0516 1-313 -69.700 23  [P] KOG2825 Putative arsenite-translocating ATPase
H.sapiens 1-314 -72.000 21  sp|O43681|ASNA_HUMAN ATPase ASNA1 OS=Homo sapiens GN=ASNA1 PE=1 SV=2
320-396 -10.400 13  sp|Q8NBF4|YG006_HUMAN Putative uncharacterized protein FLJ33307 OS=Homo sapiens PE=5 SV=1
HGM_OVER 14-286 -4.650 PB022506 Q11RP6_CYTH3/1-298 PB022506; Pfam-B_22506;
JCSG0516 1-307 -20.000 14  NT12379B NP_342742.1 378823 Crystal|NMR-2008-05-22
296-396 -10.700 17  TM0374 TM0374 282249 Purified-2001-03-14
NEW_HUMAN_DOMAINS 2-64 -6.700 17  sp|Q9HCU5|PREB_HUMAN Prolactin regulatory element-binding protein OS=Homo sapiens GN=PREB PE=1 SV=2 (Range: 1-91)
PDB0516 2-392 -93.700 25  3igf_A mol:protein length:374 All4481 protein
PfamA30U 1-307 -73.800 22  PF02374.13; ASNA_HUMAN/37-340; Anion-transporting ATPase
325-396 -12.100 16  PF05455.9; GVPH1_HALSA/8-182; GvpH
SCOP206 2-305 -66.100 26  d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
325-396 -12.000 27  d4elda_ b.15.1.1 (A:) Small heat shock protein {Methanococcus jannaschii [TaxId: 2190]}
VFDB 1-268 -12.700 15  VFG001368(gi:15900278) (cps4D) capsular polysaccharide biosynthesis protein Cps4D [Capsule (VF0144)] [Streptococcus pneumoniae TIGR4]
3-354 -11.900 18  VFG001265(gi:15596651) (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
325-396 -9.570 16  VFG001397(gi:15609168) (hspX) Heat shock protein HspX (alpha-crystallin homolog) (14 kDa antigen) (HSP16.3) [HspX (VF0301)] [Mycobacterium tuberculosis H37Rv]
4 [P] COG0004 Ammonia permease 470 COG0516 24-462 -108.000 36  [P] KOG0682 Ammonia permease
H.sapiens 62-460 -57.000 13  sp|P18577|RHCE_HUMAN(removed signalp:1-36) Blood group Rh(CE) polypeptide OS=Homo sapiens GN=RHCE PE=1 SV=2
HGM_OVER 310-437 -3.310 14  PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;
JCSG0516 11-461 -71.000 33  TM0402 TM0402 282275 Diffraction|HSQC-2005-02-10
NEW_HUMAN_DOMAINS 237-335 -6.770 12  sp|Q9UHW9|S12A6_HUMAN Solute carrier family 12 member 6 OS=Homo sapiens GN=SLC12A6 PE=1 SV=2 (Range: 364-453)
PDB0516 31-469 -117.000 43  2nmr_A mol:protein length:424 Ammonia channel
PfamA30U 41-460 -105.000 37  PF00909.19; MEP2_YEAST/33-444; Ammonium Transporter Family
SCOP206 35-461 -116.000 44  d2b2ha_ f.44.1.0 (A:) automated matches {Archaeoglobus fulgidus [TaxId: 2234]}
VFDB 43-98 -5.660 19  VFG002209(gi:17988370) (virB2) type IV secretion system protein VirB2 [VirB type IV secretion system (VF0365)] [Brucella melitensis bv. 1 str. 16M]
5 [F] COG0005 Purine nucleoside phosphorylase 271 COG0516 2-271 -109.000 46  [F] KOG3984 Purine nucleoside phosphorylase
H.sapiens 2-271 -109.000 46  sp|P00491|PNPH_HUMAN Purine nucleoside phosphorylase OS=Homo sapiens GN=PNP PE=1 SV=2
HGM_OVER 43-160 -4.060 13  HGC00789 gi|163310627|dbj|BABD01000073.1|7.0 TMP01036;
JCSG0516 1-270 -117.000 46  TM1596 TM1596 283453 PDB-2004-09-30
NEW_HUMAN_DOMAINS 194-257 -5.060 17  sp|Q7Z5Y7|KCD20_HUMAN BTB/POZ domain-containing protein KCTD20 OS=Homo sapiens GN=KCTD20 PE=1 SV=1 (Range: 339-419)
PDB0516 1-270 -116.000 46  1vmk_A mol:protein length:277 purine nucleoside phosphorylase
PfamA30U 22-268 -31.800 19  PF01048.18; Q4DQ97_TRYCC/13-261; Phosphorylase superfamily
SCOP206 7-270 -111.000 41  d4uc0a_ c.56.2.0 (A:) automated matches {Agrobacterium vitis [TaxId: 373]}
VFDB 51-269 -7.090 13  VFG002473(gi:53722537) (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
6 [E] COG0006 Xaa-Pro aminopeptidase 356 COG0516 3-356 -53.200 21  [E] KOG2414 Putative Xaa-Pro aminopeptidase
H.sapiens 3-356 -53.200 21  sp|Q9NQH7|XPP3_HUMAN Probable Xaa-Pro aminopeptidase 3 OS=Homo sapiens GN=XPNPEP3 PE=1 SV=1
105-356 -61.200 18  sp|Q9Y5B9|SP16H_HUMAN FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1 (Range: 151-450)
HGM_OVER 117-304 -3.150 10  HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;
JCSG0516 3-356 -113.000 29  TM0042 TM0042 281923 Purified-2001-01-30
NEW_HUMAN_DOMAINS 158-320 -6.110 18  sp|Q9UKN5|PRDM4_HUMAN PR domain zinc finger protein 4 OS=Homo sapiens GN=PRDM4 PE=1 SV=3 (Range: 1-167)
PDB0516 1-356 -117.000 31  3q6d_A mol:protein length:356 Proline dipeptidase
PfamA30U 5-127 -16.500 13  PF01321.16; Y4TL_RHISN/18-162; Creatinase/Prolidase N-terminal domain
134-338 -86.000 38  PF00557.22; YOD1_SCHPO/228-435; Metallopeptidase family M24
SCOP206 9-127 -23.400 20  d1pv9a1 c.55.2.1 (A:8-124) Aminopeptidase P {Pyrococcus furiosus [TaxId: 2261]}
128-348 -98.700 36  d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain {Pyrococcus furiosus [TaxId: 2261]}
VFDB 125-317 -5.270 VFG001369(gi:15900279) (cps4E) capsular polysaccharide biosynthesis protein Cps4E [Capsule (VF0144)] [Streptococcus pneumoniae TIGR4]
7 [H] COG0007 Uroporphyrinogen-III methylase 292 COG0516 5-266 -73.600 27  [H] KOG1527 Uroporphyrin III methyltransferase
H.sapiens 27-269 -52.200 12  sp|Q9H2P9|DPH5_HUMAN Diphthine synthase OS=Homo sapiens GN=DPH5 PE=1 SV=2
HGM_OVER 44-167 -3.900 12  HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;
JCSG0516 17-291 -89.800 42  MJ15755B YP_386173.1 402946 Purified-2009-10-17
NEW_HUMAN_DOMAINS 62-156 -6.160 15  sp|Q6Y2X3|DJC14_HUMAN DnaJ homolog subfamily C member 14 OS=Homo sapiens GN=DNAJC14 PE=2 SV=2 (Range: 512-616)
PDB0516 18-281 -112.000 73  1s4d_A mol:protein length:280 Uroporphyrin-III C-methyltransferase
PfamA30U 26-239 -44.500 23  PF00590.18; Q3A6A0_PELCD/39-272; Tetrapyrrole (Corrin/Porphyrin) Methylases
SCOP206 25-270 -104.000 44  d1pjqa2 c.90.1.1 (A:216-457) Siroheme synthase CysG, domains 4 and 5 {Salmonella typhimurium [TaxId: 90371]}
VFDB 88-230 -5.430 15  VFG002163(gi:52840692) (icmN/dotK) Dot/Icm type IV secretion system protein IcmN/DotK [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
8 [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases 554 COG0516 3-553 -145.000 42  [J] KOG1148 Glutaminyl-tRNA synthetase
H.sapiens 2-286 -103.000 41  sp|P07814|SYEP_HUMAN Bifunctional aminoacyl-tRNA synthetase OS=Homo sapiens GN=EPRS PE=1 SV=5 (Range: 151-450)
65-374 -112.000 49  sp|P47897|SYQ_HUMAN Glutaminyl-tRNA synthetase OS=Homo sapiens GN=QARS PE=1 SV=1 (Range: 301-600)
225-525 -100.000 42  sp|P47897|SYQ_HUMAN Glutaminyl-tRNA synthetase OS=Homo sapiens GN=QARS PE=1 SV=1 (Range: 451-750)
HGM_OVER 109-204 -4.280 16  PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;
JCSG0516 11-512 -26.600 15  TM1875 TM1875 283727 Selected-2001-10-12
28-356 -26.800 23  TM1351 TM1351 283212 PDB-2006-12-06
NEW_HUMAN_DOMAINS 115-273 -4.660 18  sp|Q6UX73|CP089_HUMAN UPF0764 protein C16orf89 OS=Homo sapiens GN=C16orf89 PE=2 SV=2 (Range: 103-292)
PDB0516 1-554 -189.000 100  1o0b_A mol:protein length:554 Glutaminyl-tRNA synthetase
PfamA30U 27-338 -132.000 100  PF00749.19; SYQ_ECOLI/27-338; tRNA synthetases class I (E and Q), catalytic domain
340-528 -79.300 49  PF03950.16; Q6AJL3_DESPS/350-543; tRNA synthetases class I (E and Q), anti-codon binding domain
SCOP206 7-339 -133.000 65  d5bnza1 c.26.1.0 (A:8-340) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}
340-551 -83.400 53  d5bnza2 b.53.1.0 (A:341-555) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}
VFDB 46-532 -4.620 10  VFG000884(gi:26249425) (papC) usher protein PapC [P fimbriae (VF0220)] [Escherichia coli CFT073]
9 [J] COG0009 Putative translation factor (SUA5) 346 COG0516 1-346 -106.000 43  [J] KOG3051 RNA binding/translational regulation protein of the SUA5 family
H.sapiens 1-224 -69.700 27  sp|Q86U90|YRDC_HUMAN YrdC domain-containing protein, mitochondrial OS=Homo sapiens GN=YRDC PE=1 SV=1
HGM_OVER 1-200 -3.180 12  PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;
JCSG0516 3-344 -114.000 41  TM0852 TM0852 282722 Crystal|NMR-2002-06-20
NEW_HUMAN_DOMAINS 93-156 -4.710 21  tr|E7ENL1|E7ENL1_HUMAN Uncharacterized protein OS=Homo sapiens GN=MAEA PE=4 SV=1 (Range: 187-248)
PDB0516 3-346 -115.000 45  2eqa_A mol:protein length:352 Hypothetical protein ST1526
PfamA30U 26-203 -89.000 35  PF01300.16; Q6AL59_DESPS/27-203; Telomere recombination
205-341 -56.300 40  PF03481.11; R5ALB5_9CLOT/198-340; Putative GTP-binding controlling metal-binding
SCOP206 6-217 -80.400 26  d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Methanobacterium thermoautotrophicum [TaxId: 145262]}
VFDB 82-284 -5.330 14  VFG045492(gi:52840620) (lpg0375) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
10 [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 306 COG0516 2-305 -106.000 35  [E] KOG2964 Arginase family protein
H.sapiens 2-305 -111.000 37  sp|Q9BSE5|SPEB_HUMAN Agmatinase, mitochondrial OS=Homo sapiens GN=AGMAT PE=1 SV=2
HGM_OVER 89-243 -3.500 12  HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;
JCSG0516 38-241 -12.500 RH20225A NP_349254.1 415789 Selected-2009-12-04
84-298 -18.000 14  RH20124A NP_988387.1 415575 Selected-2009-12-04
NEW_HUMAN_DOMAINS 36-294 -5.560 11  sp|Q96AB6|NTAN1_HUMAN Protein N-terminal asparagine amidohydrolase OS=Homo sapiens GN=NTAN1 PE=1 SV=3 (Range: 1-310)
PDB0516 4-305 -116.000 37  1gq6_A mol:protein length:313 PROCLAVAMINATE AMIDINO HYDROLASE
PfamA30U 34-299 -109.000 40  PF00491.19; Q164F5_ROSDO/34-308; Arginase family
SCOP206 11-305 -117.000 38  d1gq6a_ c.42.1.1 (A:) Proclavaminate amidino hydrolase {Streptomyces clavuligerus [TaxId: 1901]}
VFDB 45-297 -5.740 17  VFG002223(gi:17987679) (pmm) phosphomannomutase [LPS (VF0367)] [Brucella melitensis bv. 1 str. 16M]
11 [S] COG0011 Uncharacterized conserved protein 94 COG0516 18-89 -6.000 15  [J] KOG2916 Translation initiation factor 2, alpha subunit (eIF-2alpha)
H.sapiens 11-94 -6.740 sp|Q9NPG3|UBN1_HUMAN Ubinuclein-1 OS=Homo sapiens GN=UBN1 PE=1 SV=2 (Range: 151-450)
HGM_OVER 21-80 -4.140 20  PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)
JCSG0516 1-94 -56.400 100  TM0486 TM0486 282359 PDB-2004-05-05
NEW_HUMAN_DOMAINS 16-66 -5.590 17  sp|Q9H7D7|WDR26_HUMAN WD repeat-containing protein 26 OS=Homo sapiens GN=WDR26 PE=1 SV=3 (Range: 124-301)
PDB0516 1-94 -55.700 100  1vk8_A mol:protein length:106 hypothetical protein TM0486
PfamA30U 6-94 -38.200 23  PF01910.15; A5D404_PELTS/4-96; Thiamine-binding protein
SCOP206 3-94 -52.800 100  d1vk8a_ d.58.48.1 (A:) Hypothetical protein TM0486 {Thermotoga maritima [TaxId: 2336]}
VFDB 4-94 -4.920 12  VFG041291(gi:52841930) (ppeB) Dot/Icm type IV secretion system effector PpeB [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
12 [J] COG0012 Predicted GTPase, probable translation factor 397 COG0516 1-396 -76.000 22  [R] KOG1491 Predicted GTP-binding protein (ODN superfamily)
H.sapiens 1-396 -78.200 26  sp|Q9NTK5|OLA1_HUMAN Obg-like ATPase 1 OS=Homo sapiens GN=OLA1 PE=1 SV=2
HGM_OVER 165-397 -3.250 PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;
JCSG0516 3-396 -80.900 23  TM1240 TM1240 283105 Purified-2001-12-19
NEW_HUMAN_DOMAINS 77-139 -4.950 23  sp|P78312|F193A_HUMAN Protein FAM193A OS=Homo sapiens GN=FAM193A PE=1 SV=2 (Range: 409-480)
PDB0516 1-397 -142.000 88  1wxq_A mol:protein length:397 GTP-binding protein
PfamA30U 1-263 -17.500 25  PF02421.16; B3EBA7_GEOLS/7-162; Ferrous iron transport protein B
220-327 -32.200 38  PF08438.8; U1I0Z5_ENDPU/226-345; GTPase of unknown function C-terminal
334-395 -23.700 30  PF06071.11; E6TZX7_BACCJ/282-365; Protein of unknown function (DUF933 topsan)
SCOP206 1-319 -119.000 87  d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}
320-395 -36.400 90  d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}
VFDB 1-363 -11.600 11  VFG001859(gi:52842863) (feoB) ferrous iron transporter B [FeoAB (VF0160)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
13 [J] COG0013 Alanyl-tRNA synthetase 872 COG0516 1-872 -176.000 34  [J] KOG0188 Alanyl-tRNA synthetase
H.sapiens 2-282 -78.200 42  sp|P49588|SYAC_HUMAN Alanyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2 (Range: 1-300)
135-432 -85.900 38  sp|P49588|SYAC_HUMAN Alanyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2 (Range: 151-450)
283-560 -70.700 33  sp|P49588|SYAC_HUMAN Alanyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2 (Range: 301-600)
467-872 -53.800 21  sp|Q9BTE6|AASD1_HUMAN Alanyl-tRNA editing protein Aarsd1 OS=Homo sapiens GN=AARSD1 PE=1 SV=2
535-822 -73.000 24  sp|Q5JTZ9|SYAM_HUMAN Alanyl-tRNA synthetase, mitochondrial OS=Homo sapiens GN=AARS2 PE=1 SV=1 (Range: 601-900)
HGM_OVER 322-434 -5.070 10  PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]
JCSG0516 1-871 -229.000 40  TM1396 TM1396 283257 Selected-2001-10-12
NEW_HUMAN_DOMAINS 299-415 -5.950 16  tr|E9PG74|E9PG74_HUMAN Uncharacterized protein OS=Homo sapiens GN=TPCN2 PE=4 SV=2 (Range: 71-194)
PDB0516 1-703 -167.000 28  2zze_A mol:protein length:752 Alanyl-tRNA synthetase
1-872 -152.000 26  3wqy_A mol:protein length:906 Alanine--tRNA ligase
PfamA30U 8-558 -143.000 42  PF01411.17; SYA_HAEIN/6-555; tRNA synthetases class II (A)
655-698 -29.000 70  PF07973.12; SYA_CALS4/653-696; Threonyl and Alanyl tRNA synthetase second additional domain
802-869 -29.900 30  PF02272.17; SYA_ZYMMO/814-885; DHHA1 domain
SCOP206 3-248 -92.900 48  d1yfsa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
249-461 -80.300 41  d1yfsa1 a.203.1.1 (A:237-453) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
487-554 -17.100 35  d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
559-700 -52.400 25  d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Pyrococcus horikoshii [TaxId: 53953]}
VFDB 246-660 -7.390 12  VFG002328(gi:123442764) (fliF) flagellar M-ring protein FliF [Flagella (VF0394)] [Yersinia enterocolitica subsp. enterocolitica 8081]
14 [E] COG0014 Gamma-glutamyl phosphate reductase 417 COG0516 4-417 -117.000 38  [E] KOG4165 Gamma-glutamyl phosphate reductase
H.sapiens 2-241 -69.400 34  sp|P54886|P5CS_HUMAN Delta-1-pyrroline-5-carboxylate synthase OS=Homo sapiens GN=ALDH18A1 PE=1 SV=2 (Range: 301-600)
90-395 -101.000 36  sp|P54886|P5CS_HUMAN Delta-1-pyrroline-5-carboxylate synthase OS=Homo sapiens GN=ALDH18A1 PE=1 SV=2 (Range: 451-750)
HGM_OVER 173-364 -3.460 PB012386 gi|82541244|ref|XP_724876.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii str. 17XNL]gi|23479680|gb|EAA16441.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii]
JCSG0516 2-416 -132.000 46  TM0293 TM0293 282169 PDB-2003-02-12
NEW_HUMAN_DOMAINS 359-412 -5.560 20  sp|Q9UPA5|BSN_HUMAN Protein bassoon OS=Homo sapiens GN=BSN PE=1 SV=4 (Range: 2013-2108)
PDB0516 2-417 -132.000 45  4ghk_A mol:protein length:444 Gamma-glutamyl phosphate reductase
PfamA30U 2-408 -16.900 16  PF00171.20; BETB_ECOLI/15-479; Aldehyde dehydrogenase family
SCOP206 2-416 -132.000 46  d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Thermotoga maritima [TaxId: 2336]}
VFDB 1-408 -19.900 17  VFG006717(gi:16803674) (lap) Listeria adhesion protein Lap [Lap (VF0444)] [Listeria monocytogenes EGD-e]
15 [F] COG0015 Adenylosuccinate lyase 431 COG0516 1-429 -74.400 24  [F] KOG2700 Adenylosuccinate lyase
H.sapiens 1-429 -73.200 27  sp|P30566|PUR8_HUMAN Adenylosuccinate lyase OS=Homo sapiens GN=ADSL PE=1 SV=2
HGM_OVER 175-294 -2.740 14  PB038401 Q8RFH0_FUSNN/1-210 PB038401; Pfam-B_38401;
JCSG0516 24-384 -26.800 18  TM1781 TM1781 354159 Crystal|NMR-2003-01-07
NEW_HUMAN_DOMAINS 261-325 -6.880 14  sp|Q9NP73|ALG13_HUMAN UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Homo sapiens GN=ALG13 PE=1 SV=2 (Range: 1060-1137)
PDB0516 1-431 -135.000 55  1f1o_A mol:protein length:431 ADENYLOSUCCINATE LYASE
PfamA30U 26-286 -20.100 23  PF00206.18; FUMC1_BRADU/22-352; Lyase
350-429 -41.300 40  PF10397.7; C7JHA0_ACEP3/358-441; Adenylosuccinate lyase C-terminus
SCOP206 2-429 -133.000 48  d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]}
VFDB 187-253 -5.350 23  VFG011430(gi:17987758) (acpXL) acyl carrier protein [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M]
16 [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit 344 COG0516 1-342 -68.000 21  [J] COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type)
56-343 -70.300 25  [J] KOG2783 Phenylalanyl-tRNA synthetase
H.sapiens 21-342 -78.300 27  sp|O95363|SYFM_HUMAN Phenylalanyl-tRNA synthetase, mitochondrial OS=Homo sapiens GN=FARS2 PE=1 SV=1
HGM_OVER 1-145 -2.870 13  PB044822 Q89ZL7_BACTN/1-147 PB044822; Pfam-B_44822;
JCSG0516 4-341 -126.000 50  TM0821 TM0821 282691 Purified-2001-04-19
NEW_HUMAN_DOMAINS 132-258 -5.000 14  sp|Q5BN46|CI116_HUMAN UPF0691 protein C9orf116 OS=Homo sapiens GN=C9orf116 PE=2 SV=1 (Range: 21-136)
PDB0516 3-342 -131.000 53  4p71_C mol:protein length:338 Phenylalanine--tRNA ligase alpha subunit
PfamA30U 20-88 -32.300 40  PF02912.16; SYFA_IDILO/18-86; Aminoacyl tRNA synthetase class II, N-terminal domain
92-341 -123.000 100  PF01409.18; SYFA_BACHD/92-341; tRNA synthetases class II core domain (F)
SCOP206 6-91 -38.800 33  d3pcoc1 a.2.7.0 (C:5-90) automated matches {Escherichia coli [TaxId: 562]}
82-344 -120.000 71  d2rhqa1 d.104.1.0 (A:84-351) automated matches {Staphylococcus haemolyticus [TaxId: 1283]}
VFDB 26-341 -5.480 14  VFG001153(gi:475773) (hmw1C) glycosyltransferase [HMW1/HMW2 (VF0038)] [Haemophilus influenzae str. 12]
17 [J] COG0017 Aspartyl/asparaginyl-tRNA synthetases 430 COG0516 2-430 -117.000 34  [J] KOG0555 Asparaginyl-tRNA synthetase
H.sapiens 2-430 -118.000 32  sp|O43776|SYNC_HUMAN Asparaginyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=NARS PE=1 SV=1
HGM_OVER 221-335 -3.290 12  HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;
JCSG0516 9-426 -36.300 26  TM1441 TM1441 283300 Selected-2001-10-12
NEW_HUMAN_DOMAINS 132-220 -4.530 12  tr|E7ERK0|E7ERK0_HUMAN Uncharacterized protein OS=Homo sapiens GN=MUC4 PE=4 SV=1 (Range: 4310-4442)
PDB0516 8-430 -124.000 45  1x54_A mol:protein length:434 Asparaginyl-tRNA synthetase
PfamA30U 109-424 -24.200 23  PF00152.18; SYDND_NEIMB/118-567; tRNA synthetases class II (D, K and N)
SCOP206 9-101 -32.600 35  d1x54a1 b.40.4.0 (A:1-104) automated matches {Pyrococcus horikoshii [TaxId: 53953]}
100-430 -119.000 48  d1x54a2 d.104.1.0 (A:105-434) automated matches {Pyrococcus horikoshii [TaxId: 53953]}
VFDB 316-374 -4.840 15  VFG001818(gi:15609514) (mbtH) putative protein MbtH [Mycobactin (VF0299)] [Mycobacterium tuberculosis H37Rv]
18 [J] COG0018 Arginyl-tRNA synthetase 556 COG0516 1-556 -56.900 25  [J] KOG1195 Arginyl-tRNA synthetase
H.sapiens 7-556 -56.500 19  sp|Q5T160|SYRM_HUMAN Probable arginyl-tRNA synthetase, mitochondrial OS=Homo sapiens GN=RARS2 PE=1 SV=1
HGM_OVER 368-478 -3.330 18  PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;
JCSG0516 11-556 -156.000 45  TM1093 TM1093 282959 Purified-2001-12-12
NEW_HUMAN_DOMAINS 1-183 -19.300 11  sp|Q5D0E6|DALD3_HUMAN DALR anticodon-binding domain-containing protein 3 OS=Homo sapiens GN=DALRD3 PE=2 SV=2 (Range: 1-178)
PDB0516 3-556 -72.700 30  2zue_A mol:protein length:629 Arginyl-tRNA synthetase
93-556 -125.000 39  3fnr_A mol:protein length:464 Arginyl-tRNA synthetase
PfamA30U 9-95 -34.100 33  PF03485.14; SYRC_DROME/81-171; Arginyl tRNA synthetase N terminal domain
106-448 -23.300 17  PF00750.17; SYR_HAEIN/95-446; tRNA synthetases class I (R)
437-556 -56.700 38  PF05746.13; SYR_PYRFU/507-629; DALR anticodon binding domain
SCOP206 11-109 -20.600 19  d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), N-terminal `additional` domain {Thermus thermophilus [TaxId: 274]}
117-427 -35.700 22  d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}
436-556 -54.300 35  d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 315-443 -5.460 15  VFG001867(gi:52843161) (sodB) superoxide dismutase [SodB (VF0169)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
19 [E] COG0019 Diaminopimelate decarboxylase 436 COG0516 19-423 -37.300 22  [E] KOG0622 Ornithine decarboxylase
H.sapiens 23-424 -38.400 19  sp|Q96A70|ADC_HUMAN Arginine decarboxylase OS=Homo sapiens GN=ADC PE=2 SV=1
HGM_OVER 328-428 -3.580 11  PB035451 Q3Z7G7_DEHE1/1-135 PB035451; Pfam-B_35451;
JCSG0516 23-433 -75.400 32  TM1517 TM1517 283374 Purified-2002-01-08
NEW_HUMAN_DOMAINS 313-342 -5.830 32  sp|Q70EK8|UBP53_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Homo sapiens GN=USP53 PE=2 SV=2 (Range: 989-1073)
PDB0516 5-434 -125.000 40  1hkv_A mol:protein length:453 DIAMINOPIMELATE DECARBOXYLASE
PfamA30U 39-296 -28.000 21  PF02784.14; DCOR2_DROME/37-268; Pyridoxal-dependent decarboxylase, pyridoxal binding domain
319-411 -39.800 41  PF00278.20; R9SMY8_9EURY/294-398; Pyridoxal-dependent decarboxylase, C-terminal sheet domain
SCOP206 39-302 -98.100 40  d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]}
258-434 -76.700 37  d1hkva1 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]}
VFDB 131-401 -4.910 12  VFG002343(gi:123442779) (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0394)] [Yersinia enterocolitica subsp. enterocolitica 8081]
20 [I] COG0020 Undecaprenyl pyrophosphate synthase 248 COG0516 2-246 -97.700 30  [I] KOG1602 Cis-prenyltransferase
H.sapiens 1-248 -98.600 32  sp|Q86SQ9|DHDDS_HUMAN Dehydrodolichyl diphosphate synthase OS=Homo sapiens GN=DHDDS PE=2 SV=3
HGM_OVER 68-212 -4.590 13  PB028090 gi|167758043|ref|ZP_02430170.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]gi|167663940|gb|EDS08070.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]
JCSG0516 13-239 -111.000 51  TM1398 TM1398 283259 Purified-2001-10-16
NEW_HUMAN_DOMAINS 39-201 -6.280 13  sp|A7E2V4|K0913_HUMAN Zinc finger SWIM domain-containing protein KIAA0913 OS=Homo sapiens GN=KIAA0913 PE=1 SV=1 (Range: 1268-1423)
PDB0516 2-244 -121.000 49  1jp3_A mol:protein length:253 undecaprenyl pyrophosphate synthase
PfamA30U 21-235 -108.000 48  PF01255.17; K9V8M2_9CYAN/27-247; Putative undecaprenyl diphosphate synthase
SCOP206 13-235 -116.000 35  d3ugsa_ c.101.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}
VFDB 2-248 -110.000 48  VFG002190(gi:29376987) (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.