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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 8581next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 [H] COG0001 Glutamate-1-semialdehyde aminotransferase 411 PfamA30U 16-408 -44.200 27  PF00202.19; Y2045_BACPE/19-432; Aminotransferase class-III
2 [E] COG0002 Acetylglutamate semialdehyde dehydrogenase 336 PfamA30U 3-135 -18.400 21  PF01118.22; DHAS_YEAST/6-132; Semialdehyde dehydrogenase, NAD binding domain
3 [P] COG0003 Oxyanion-translocating ATPase 396 PfamA30U 1-307 -73.800 22  PF02374.13; ASNA_HUMAN/37-340; Anion-transporting ATPase
325-396 -12.100 16  PF05455.9; GVPH1_HALSA/8-182; GvpH
4 [P] COG0004 Ammonia permease 470 PfamA30U 41-460 -105.000 37  PF00909.19; MEP2_YEAST/33-444; Ammonium Transporter Family
5 [F] COG0005 Purine nucleoside phosphorylase 271 PfamA30U 22-268 -31.800 19  PF01048.18; Q4DQ97_TRYCC/13-261; Phosphorylase superfamily
6 [E] COG0006 Xaa-Pro aminopeptidase 356 PfamA30U 5-127 -16.500 13  PF01321.16; Y4TL_RHISN/18-162; Creatinase/Prolidase N-terminal domain
134-338 -86.000 38  PF00557.22; YOD1_SCHPO/228-435; Metallopeptidase family M24
7 [H] COG0007 Uroporphyrinogen-III methylase 292 PfamA30U 26-239 -44.500 23  PF00590.18; Q3A6A0_PELCD/39-272; Tetrapyrrole (Corrin/Porphyrin) Methylases
8 [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases 554 PfamA30U 27-338 -132.000 100  PF00749.19; SYQ_ECOLI/27-338; tRNA synthetases class I (E and Q), catalytic domain
340-528 -79.300 49  PF03950.16; Q6AJL3_DESPS/350-543; tRNA synthetases class I (E and Q), anti-codon binding domain
9 [J] COG0009 Putative translation factor (SUA5) 346 PfamA30U 26-203 -89.000 35  PF01300.16; Q6AL59_DESPS/27-203; Telomere recombination
205-341 -56.300 40  PF03481.11; R5ALB5_9CLOT/198-340; Putative GTP-binding controlling metal-binding
10 [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 306 PfamA30U 34-299 -109.000 40  PF00491.19; Q164F5_ROSDO/34-308; Arginase family
11 [S] COG0011 Uncharacterized conserved protein 94 PfamA30U 6-94 -38.200 23  PF01910.15; A5D404_PELTS/4-96; Thiamine-binding protein
12 [J] COG0012 Predicted GTPase, probable translation factor 397 PfamA30U 1-263 -17.500 25  PF02421.16; B3EBA7_GEOLS/7-162; Ferrous iron transport protein B
220-327 -32.200 38  PF08438.8; U1I0Z5_ENDPU/226-345; GTPase of unknown function C-terminal
334-395 -23.700 30  PF06071.11; E6TZX7_BACCJ/282-365; Protein of unknown function (DUF933 topsan)
13 [J] COG0013 Alanyl-tRNA synthetase 872 PfamA30U 8-558 -143.000 42  PF01411.17; SYA_HAEIN/6-555; tRNA synthetases class II (A)
655-698 -29.000 70  PF07973.12; SYA_CALS4/653-696; Threonyl and Alanyl tRNA synthetase second additional domain
802-869 -29.900 30  PF02272.17; SYA_ZYMMO/814-885; DHHA1 domain
14 [E] COG0014 Gamma-glutamyl phosphate reductase 417 PfamA30U 2-408 -16.900 16  PF00171.20; BETB_ECOLI/15-479; Aldehyde dehydrogenase family
15 [F] COG0015 Adenylosuccinate lyase 431 PfamA30U 26-286 -20.100 23  PF00206.18; FUMC1_BRADU/22-352; Lyase
350-429 -41.300 40  PF10397.7; C7JHA0_ACEP3/358-441; Adenylosuccinate lyase C-terminus
16 [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit 344 PfamA30U 20-88 -32.300 40  PF02912.16; SYFA_IDILO/18-86; Aminoacyl tRNA synthetase class II, N-terminal domain
92-341 -123.000 100  PF01409.18; SYFA_BACHD/92-341; tRNA synthetases class II core domain (F)
17 [J] COG0017 Aspartyl/asparaginyl-tRNA synthetases 430 PfamA30U 109-424 -24.200 23  PF00152.18; SYDND_NEIMB/118-567; tRNA synthetases class II (D, K and N)
18 [J] COG0018 Arginyl-tRNA synthetase 556 PfamA30U 9-95 -34.100 33  PF03485.14; SYRC_DROME/81-171; Arginyl tRNA synthetase N terminal domain
106-448 -23.300 17  PF00750.17; SYR_HAEIN/95-446; tRNA synthetases class I (R)
437-556 -56.700 38  PF05746.13; SYR_PYRFU/507-629; DALR anticodon binding domain
19 [E] COG0019 Diaminopimelate decarboxylase 436 PfamA30U 39-296 -28.000 21  PF02784.14; DCOR2_DROME/37-268; Pyridoxal-dependent decarboxylase, pyridoxal binding domain
319-411 -39.800 41  PF00278.20; R9SMY8_9EURY/294-398; Pyridoxal-dependent decarboxylase, C-terminal sheet domain
20 [I] COG0020 Undecaprenyl pyrophosphate synthase 248 PfamA30U 21-235 -108.000 48  PF01255.17; K9V8M2_9CYAN/27-247; Putative undecaprenyl diphosphate synthase


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.