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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 7384next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 IDP00001 aldehyde-alcohol dehydrogenase BA_4599 [Bacillus anthracis str. Ames] 867 COG0516 14-469 -29.900 14  [C] KOG2454 Betaine aldehyde dehydrogenase
456-867 -128.000 51  [C] COG1454 Alcohol dehydrogenase, class IV
2 IDP00002 surface layer protein, (pxo1-54) GBAA_pXO1_0079 [Bacillus anthracis str. 'Ames Ancestor'] 404 COG0516 43-225 -5.980 10  [T] KOG0044 Ca2+ sensor (EF-Hand superfamily)
3 IDP00003 gene: gerXC; spore germination protein xc, (pxo1-112) GBAA_pXO1_0158 [Bacillus anthracis str. 'Ames Ancestor'] 317 COG0516 1-31 -8.140 19  [M] COG4238 Murein lipoprotein
4 IDP00004 Chromosomal replication initiator protein dnaA BA_0001 [Bacillus anthracis str. Ames] 446 COG0516 3-446 -132.000 41  [L] COG0593 ATPase involved in DNA replication initiation
5 IDP00005 internalin, putative BA_0552 [Bacillus anthracis str. Ames] 1070 COG0516 5-778 -61.800 15  [S] COG4886 Leucine-rich repeat (LRR) protein
139-784 -74.100 12  [T] KOG0531 Protein phosphatase 1, regulatory subunit, and related proteins
228-865 -60.300 17  [T] KOG4194 Membrane glycoprotein LIG-1
896-1034 -11.000 [Z] KOG3756 Pinin (desmosome-associated protein)
958-1070 -10.300 10  [S] KOG4517 Uncharacterized conserved protein
6 IDP00006 immune inhibitor A metalloprotease BA_0672 [Bacillus anthracis str. Ames] 799 COG0516 1-799 -172.000 35  [S] COG4412 Uncharacterized protein conserved in bacteria
7 IDP00007 gene: racE-1; glutamate racemase BA_0847 [Bacillus anthracis str. Ames] 276 COG0516 4-246 -69.900 29  [M] COG0796 Glutamate racemase
8 IDP00008 gene: cysG; uroporphyrin-III C-methyltransferase BA_1445 [Bacillus anthracis str. Ames] 258 COG0516 2-256 -108.000 38  [H] COG0007 Uroporphyrinogen-III methylase
9 IDP00009 3-dehydroquinate synthase BA_1538 [Bacillus anthracis str. Ames] 363 COG0516 1-354 -106.000 37  [E] COG0337 3-dehydroquinate synthetase
10 IDP00010 uroporphyrin-III C-methyltransferase, putative BA_2144 [Bacillus anthracis str. Ames] 474 COG0516 2-269 -91.800 36  [H] COG0007 Uroporphyrinogen-III methylase
246-469 -45.900 16  [H] COG1587 Uroporphyrinogen-III synthase
11 IDP00011 alcohol dehydrogenase, iron-containing BA_2222 [Bacillus anthracis str. Ames] 392 COG0516 1-379 -94.300 36  [C] KOG3857 Alcohol dehydrogenase, class IV
12 IDP00012 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) BA_2953 [Bacillus anthracis str. Ames] 429 COG0516 8-428 -55.300 24  [E] COG0128 5-enolpyruvylshikimate-3-phosphate synthase
13 IDP00013 LPXTG-motif cell wall anchor domain protein BA_3254 [Bacillus anthracis str. Ames] 372 COG0516 1-372 -28.500 [S] KOG0992 Uncharacterized conserved protein
38-372 -29.700 11  [S] COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain
14 IDP00014 Protein recA (Recombinase A) BA_3915 [Bacillus anthracis str. Ames] 343 COG0516 2-343 -139.000 59  [L] COG0468 RecA/RadA recombinase
15 IDP00015 UDP-N-acetylenolpyruvoylglucosamine reductase 1 (UDP-N-acetylmuramate dehydrogenase 1) BA_4048 [Bacillus anthracis str. Ames] 301 COG0516 1-301 -121.000 62  [M] COG0812 UDP-N-acetylmuramate dehydrogenase
16 IDP00016 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase) (Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptide synthetase) BA_4053 [Bacillus anthracis str. Ames] 491 COG0516 1-488 -129.000 42  [M] COG0769 UDP-N-acetylmuramyl tripeptide synthase
17 IDP00017 gene: ribBA; Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase); GTP cyclohydrolase-2 (GTP cyclohydrolase II)] BA_4333 [Bacillus anthracis str. Ames] 397 COG0516 2-397 -108.000 50  [H] KOG1284 Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase
18 IDP00018 gene: racE-2; glutamate racemase BA_4717 [Bacillus anthracis str. Ames] 269 COG0516 1-266 -71.100 24  [M] COG0796 Glutamate racemase
19 IDP00019 gene: pykA-2; pyruvate kinase BA_4843 [Bacillus anthracis str. Ames] 585 COG0516 1-472 -126.000 45  [G] KOG2323 Pyruvate kinase
475-585 -45.100 63  [T] COG3848 Phosphohistidine swiveling domain
20 IDP00020 UDP-N-acetylenolpyruvoylglucosamine reductase 2 (UDP-N-acetylmuramate dehydrogenase 2) BA_5315 [Bacillus anthracis str. Ames] 305 COG0516 7-303 -112.000 40  [M] COG0812 UDP-N-acetylmuramate dehydrogenase

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.