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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16127995|ref|NP_414542.1| thr operon leader peptide (thrL b0001 exp) [Escherichia coli str. K-12 substr. MG1655] 21 PDB0516 3-16 -4.290 50  1vry_A mol:protein length:76 Glycine receptor alpha-1 chain
2 gi|16127996|ref|NP_414543.1| fused aspartokinase I and homoserine dehydrogenase I (thrA b0002 exp) [Escherichia coli str. K-12 substr. MG1655] 820 PDB0516 1-465 -113.000 36  3c1m_A mol:protein length:473 Probable aspartokinase
461-817 -99.800 32  1q7g_A mol:protein length:359 Homoserine dehydrogenase
3 gi|16127997|ref|NP_414544.1| homoserine kinase (thrB b0003 exp) [Escherichia coli str. K-12 substr. MG1655] 310 PDB0516 1-309 -118.000 76  4rpf_A mol:protein length:310 Homoserine kinase
4 gi|16127998|ref|NP_414545.1| threonine synthase (thrC b0004 exp) [Escherichia coli str. K-12 substr. MG1655] 428 PDB0516 1-428 -131.000 100  1vb3_A mol:protein length:428 Threonine synthase
5 gi|16127999|ref|NP_414546.1|(removed signal:1-23) predicted protein (yaaX b0005 exp) [Escherichia coli str. K-12 substr. MG1655] 75 PDB0516 3-34 -9.440 23  3chx_B mol:protein length:252 PmoA
6 gi|16128000|ref|NP_414547.1| conserved protein, UPF0246 family (yaaA b0006 exp) [Escherichia coli str. K-12 substr. MG1655] 258 PDB0516 1-258 -126.000 100  5caj_A mol:protein length:278 UPF0246 protein YaaA
7 gi|16128001|ref|NP_414548.1| predicted transporter (yaaJ b0007 exp) [Escherichia coli str. K-12 substr. MG1655] 476 PDB0516 52-432 -12.900 15  3gi8_C mol:protein length:444 Uncharacterized protein MJ0609
8 gi|16128002|ref|NP_414549.1| transaldolase B (talB b0008 exp) [Escherichia coli str. K-12 substr. MG1655] 317 PDB0516 1-317 -150.000 99  3cwn_A mol:protein length:337 Transaldolase B
9 gi|16128003|ref|NP_414550.1| molybdochelatase incorporating molybdenum into molybdopterin (mog b0009 exp) [Escherichia coli str. K-12 substr. MG1655] 195 PDB0516 1-195 -105.000 99  1di6_A mol:protein length:195 MOLYBDENUM COFACTOR BIOSYNTHETIC ENZYME
10 gi|16128004|ref|NP_414551.1| inner membrane protein, Grp1_Fun34_YaaH family (yaaH b0010 exp) [Escherichia coli str. K-12 substr. MG1655] 188 PDB0516 14-123 -6.490 10  3pjs_K mol:protein length:166 Voltage-gated potassium channel
11 gi|16128005|ref|NP_414552.1| conserved protein, UPF0174 family (yaaW b0011 exp) [Escherichia coli str. K-12 substr. MG1655] 237 PDB0516 73-136 -7.940 18  1rm1_C mol:protein length:286 Transcription initiation factor IIA large cha
12 gi|16128007|ref|NP_414554.1|(removed signal:1-23) conserved protein, UPF0412 family (yaaI b0013 exp) [Escherichia coli str. K-12 substr. MG1655] 111 PDB0516 36-111 -7.880 12  4za1_A mol:protein length:151 NosA
13 gi|16128008|ref|NP_414555.1| chaperone Hsp70, co-chaperone with DnaJ (dnaK b0014 exp) [Escherichia coli str. K-12 substr. MG1655] 638 PDB0516 1-605 -210.000 99  2kho_A mol:protein length:605 Heat shock protein 70
1-638 -117.000 25  3d2e_A mol:protein length:675 Heat shock protein homolog SSE1
14 gi|16128009|ref|NP_414556.1| chaperone Hsp40, co-chaperone with DnaK (dnaJ b0015 exp) [Escherichia coli str. K-12 substr. MG1655] 376 PDB0516 1-360 -85.500 39  3lz8_A mol:protein length:329 Putative chaperone DnaJ
15 gi|16128010|ref|NP_414557.1| IS186 transposase (insL b0016 exp) [Escherichia coli str. K-12 substr. MG1655] 370 PDB0516 1-359 -27.400 12  1mm8_A mol:protein length:481 Tn5 Transposase
16 gi|16128012|ref|NP_414559.1| regulatory protein for HokC, overlaps CDS of hokC (mokC b0018 exp) [Escherichia coli str. K-12 substr. MG1655] 69 PDB0516 23-47 -5.000 12  3dl8_E mol:protein length:107 Protein-export membrane protein secG
17 gi|49175991|ref|YP_025292.1| toxic membrane protein, small (hokC b4412 exp) [Escherichia coli str. K-12 substr. MG1655] 50 PDB0516 1-27 -4.370 11  1s5l_I mol:protein length:38 Photosystem II reaction center I protein
18 gi|16128013|ref|NP_414560.1| sodium-proton antiporter (nhaA b0019 exp) [Escherichia coli str. K-12 substr. MG1655] 388 PDB0516 1-387 -117.000 99  4atv_A mol:protein length:401 NA(+)/H(+) ANTIPORTER NHAA
19 gi|16128014|ref|NP_414561.1| DNA-binding transcriptional activator (nhaR b0020 exp) [Escherichia coli str. K-12 substr. MG1655] 301 PDB0516 3-301 -64.900 15  3fzv_A mol:protein length:306 Probable transcriptional regulator
20 gi|16128015|ref|NP_414562.1| IS1 transposase B (insB b0021 exp) [Escherichia coli str. K-12 substr. MG1655] 167 PDB0516 2-166 -10.600 10  4fw2_A mol:protein length:270 Integrase
44-158 -13.300 14  3kkr_A mol:protein length:152 Integrase


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.