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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 3770next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|238922433|ref|YP_002935946.1| chromosomal replication initiation protein (EUBREC_0001) [Eubacterium rectale ATCC 33656] 453 COG0516 3-451 -125.000 33  [L] COG0593 ATPase involved in DNA replication initiation
2 gi|238922434|ref|YP_002935947.1| DNA polymerase III, beta subunit (EUBREC_0002) [Eubacterium rectale ATCC 33656] 370 COG0516 1-368 -91.600 22  [L] COG0592 DNA polymerase sliding clamp subunit (PCNA homolog)
3 gi|238922435|ref|YP_002935948.1| hypothetical protein (EUBREC_0003) [Eubacterium rectale ATCC 33656] 71 COG0516 3-70 -44.400 39  [S] COG2501 Uncharacterized conserved protein
4 gi|238922436|ref|YP_002935949.1| DNA replication and repair protein RecF (EUBREC_0004) [Eubacterium rectale ATCC 33656] 362 COG0516 1-359 -104.000 23  [L] COG1195 Recombinational DNA repair ATPase (RecF pathway)
5 gi|238922437|ref|YP_002935950.1| DNA gyrase, B subunit (EUBREC_0005) [Eubacterium rectale ATCC 33656] 645 COG0516 5-645 -156.000 53  [L] COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
6 gi|238922438|ref|YP_002935951.1| DNA gyrase, A subunit (EUBREC_0006) [Eubacterium rectale ATCC 33656] 852 COG0516 7-830 -208.000 43  [L] COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
7 gi|238922439|ref|YP_002935952.1| hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit (EUBREC_0007) [Eubacterium rectale ATCC 33656] 281 COG0516 7-281 -92.300 29  [C] COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain
8 gi|238922440|ref|YP_002935953.1| hypothetical protein (EUBREC_0008) [Eubacterium rectale ATCC 33656] 47 COG0516 7-44 -7.870 13  [W] KOG3544 Collagens (type IV and type XIII), and related proteins
9 gi|238922441|ref|YP_002935954.1| fumarate hydratase subunit B (EUBREC_0009) [Eubacterium rectale ATCC 33656] 183 COG0516 1-182 -88.300 37  [C] COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
10 gi|238922442|ref|YP_002935955.1| putative oxidoreductase (EUBREC_0016) [Eubacterium rectale ATCC 33656] 329 COG0516 2-325 -76.700 19  [GQ] KOG2741 Dimeric dihydrodiol dehydrogenase
11 gi|238922443|ref|YP_002935956.1| transcription repressor of fructose operon FruR (EUBREC_0017) [Eubacterium rectale ATCC 33656] 247 COG0516 1-247 -74.900 27  [KG] COG1349 Transcriptional regulators of sugar metabolism
12 gi|238922444|ref|YP_002935957.1| fructose-1-phosphate kinase (EUBREC_0018) [Eubacterium rectale ATCC 33656] 305 COG0516 1-304 -88.800 26  [G] COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB)
13 gi|238922445|ref|YP_002935958.1| PTS system, fructose-specific, IIABC component (EUBREC_0019) [Eubacterium rectale ATCC 33656] 642 COG0516 7-263 -45.600 21  [G] COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain
172-295 -66.700 49  [G] COG1445 Phosphotransferase system fructose-specific component IIB
302-641 -108.000 54  [G] COG1299 Phosphotransferase system, fructose-specific IIC component
14 gi|238922446|ref|YP_002935959.1| chaperone protein DnaK (EUBREC_0020) [Eubacterium rectale ATCC 33656] 586 COG0516 1-585 -185.000 53  [O] COG0443 Molecular chaperone
15 gi|238922447|ref|YP_002935960.1| hypothetical protein (EUBREC_0021) [Eubacterium rectale ATCC 33656] 290 COG0516 4-139 -10.800 15  [D] COG3599 Cell division initiation protein
4-177 -9.670 [R] KOG4398 Predicted coiled-coil protein
16 gi|238922448|ref|YP_002935961.1| DNA-binding response regulator (EUBREC_0022) [Eubacterium rectale ATCC 33656] 230 COG0516 2-226 -76.400 35  [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
17 gi|238922449|ref|YP_002935962.1|(removed signalp:1-29) hypothetical protein (EUBREC_0023) [Eubacterium rectale ATCC 33656] 428 COG0516 125-427 -39.400 17  [T] COG0642 Signal transduction histidine kinase
18 gi|238922450|ref|YP_002935963.1| hypothetical protein (EUBREC_0024) [Eubacterium rectale ATCC 33656] 761 COG0516 17-761 -144.000 20  [CE] KOG0453 Aconitase/homoaconitase (aconitase superfamily)
19 gi|238922451|ref|YP_002935964.1| hypothetical protein (EUBREC_0025) [Eubacterium rectale ATCC 33656] 437 COG0516 49-403 -34.400 18  [R] COG0628 Predicted permease
20 gi|238922452|ref|YP_002935965.1| hypothetical protein (EUBREC_0026) [Eubacterium rectale ATCC 33656] 877 COG0516 1-166 -14.700 [D] KOG1126 DNA-binding cell division cycle control protein
1-200 -13.700 19  [B] KOG1156 N-terminal acetyltransferase
9-239 -12.700 12  [DO] KOG1174 Anaphase-promoting complex (APC), subunit 7
91-454 -9.870 [R] KOG2295 C2H2 Zn-finger protein
662-863 -9.780 13  [U] COG3267 Type II secretory pathway, component ExeA (predicted ATPase)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.