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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 3770next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|238922433|ref|YP_002935946.1| chromosomal replication initiation protein (EUBREC_0001) [Eubacterium rectale ATCC 33656] 453 PDB0516 7-453 -128.000 34  2z4r_A mol:protein length:440 Chromosomal replication initiator protein dna
2 gi|238922434|ref|YP_002935947.1| DNA polymerase III, beta subunit (EUBREC_0002) [Eubacterium rectale ATCC 33656] 370 PDB0516 1-370 -114.000 100  3t0p_A mol:protein length:371 DNA polymerase III, beta subunit
3 gi|238922435|ref|YP_002935948.1| hypothetical protein (EUBREC_0003) [Eubacterium rectale ATCC 33656] 71 PDB0516 9-70 -41.600 35  1p9k_A mol:protein length:79 orf, hypothetical protein
4 gi|238922436|ref|YP_002935949.1| DNA replication and repair protein RecF (EUBREC_0004) [Eubacterium rectale ATCC 33656] 362 PDB0516 1-362 -118.000 28  2o5v_A mol:protein length:359 DNA replication and repair protein recF
5 gi|238922437|ref|YP_002935950.1| DNA gyrase, B subunit (EUBREC_0005) [Eubacterium rectale ATCC 33656] 645 PDB0516 3-644 -186.000 54  4juo_C mol:protein length:670 DNA topoisomerase 4 subunit B
6 gi|238922438|ref|YP_002935951.1| DNA gyrase, A subunit (EUBREC_0006) [Eubacterium rectale ATCC 33656] 852 PDB0516 1-505 -145.000 60  4ddq_A mol:protein length:502 DNA gyrase subunit A
31-739 -124.000 37  1zvu_A mol:protein length:716 Topoisomerase IV subunit A
505-811 -65.200 38  1zi0_A mol:protein length:307 DNA gyrase subunit A
7 gi|238922439|ref|YP_002935952.1| hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit (EUBREC_0007) [Eubacterium rectale ATCC 33656] 281 PDB0516 4-186 -6.410 14  1q6u_A mol:protein length:245 FKBP-type peptidyl-prolyl cis-trans isomerase
8 gi|238922440|ref|YP_002935953.1| hypothetical protein (EUBREC_0008) [Eubacterium rectale ATCC 33656] 47 PDB0516 33-47 -5.510 26  2lsm_A mol:protein length:61 DNA-packaging protein FI
9 gi|238922441|ref|YP_002935954.1| fumarate hydratase subunit B (EUBREC_0009) [Eubacterium rectale ATCC 33656] 183 PDB0516 1-175 -83.100 42  2isb_A mol:protein length:192 Fumarase
10 gi|238922442|ref|YP_002935955.1| putative oxidoreductase (EUBREC_0016) [Eubacterium rectale ATCC 33656] 329 PDB0516 1-324 -105.000 23  3evn_A mol:protein length:329 Oxidoreductase, Gfo/Idh/MocA family
11 gi|238922443|ref|YP_002935956.1| transcription repressor of fructose operon FruR (EUBREC_0017) [Eubacterium rectale ATCC 33656] 247 PDB0516 1-57 -19.700 21  4hob_A mol:protein length:69 Putative uncharacterized protein
3-167 -11.000 12  3sqn_A mol:protein length:485 Conserved domain protein
79-212 -10.700 23  3ixq_A mol:protein length:226 Ribose-5-phosphate isomerase A
12 gi|238922444|ref|YP_002935957.1| fructose-1-phosphate kinase (EUBREC_0018) [Eubacterium rectale ATCC 33656] 305 PDB0516 1-304 -113.000 43  2jg5_A mol:protein length:306 FRUCTOSE 1-PHOSPHATE KINASE
13 gi|238922445|ref|YP_002935958.1| PTS system, fructose-specific, IIABC component (EUBREC_0019) [Eubacterium rectale ATCC 33656] 642 PDB0516 1-636 -9.910 12  4yzf_A mol:protein length:911 Band 3 anion transport protein
2-149 -48.500 28  2a0j_A mol:protein length:149 PTS system, nitrogen regulatory IIA protein
173-278 -66.000 51  2r4q_A mol:protein length:106 Phosphotransferase system (PTS) fructose-spec
14 gi|238922446|ref|YP_002935959.1| chaperone protein DnaK (EUBREC_0020) [Eubacterium rectale ATCC 33656] 586 PDB0516 1-585 -178.000 52  2kho_A mol:protein length:605 Heat shock protein 70
15 gi|238922447|ref|YP_002935960.1| hypothetical protein (EUBREC_0021) [Eubacterium rectale ATCC 33656] 290 PDB0516 2-275 -7.690 4m0m_A mol:protein length:756 Putative uncharacterized protein
16 gi|238922448|ref|YP_002935961.1| DNA-binding response regulator (EUBREC_0022) [Eubacterium rectale ATCC 33656] 230 PDB0516 2-227 -88.500 32  2oqr_A mol:protein length:230 Sensory transduction protein regX3
17 gi|238922449|ref|YP_002935962.1|(removed signalp:1-29) hypothetical protein (EUBREC_0023) [Eubacterium rectale ATCC 33656] 428 PDB0516 126-427 -34.700 18  4biu_A mol:protein length:298 SENSOR PROTEIN CPXA
182-423 -41.700 21  4q20_A mol:protein length:268 Sensor protein DivL
18 gi|238922450|ref|YP_002935963.1| hypothetical protein (EUBREC_0024) [Eubacterium rectale ATCC 33656] 761 PDB0516 17-761 -148.000 21  1aco_A mol:protein length:754 ACONITASE
19 gi|238922451|ref|YP_002935964.1| hypothetical protein (EUBREC_0025) [Eubacterium rectale ATCC 33656] 437 PDB0516 277-405 -7.890 13  4hzu_S mol:protein length:166 Predicted membrane protein
20 gi|238922452|ref|YP_002935965.1| hypothetical protein (EUBREC_0026) [Eubacterium rectale ATCC 33656] 877 PDB0516 1-169 -17.100 14  5aio_A mol:protein length:448 TRANSCRIPTION FACTOR TAU 131 KDA SUBUNIT
1-208 -14.000 13  3qky_A mol:protein length:261 Outer membrane assembly lipoprotein YfiO
1-241 -13.200 13  4rg6_A mol:protein length:560 Cell division cycle protein 27 homolog
605-877 -40.200 17  3syk_A mol:protein length:309 Protein CbbX


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.