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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1653next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB (HP0001) [Helicobacter pylori 26695] 138 COG0516 1-135 -70.700 27  [K] COG0781 Transcription termination factor
2 gi|15644636|ref|NP_206804.1| 6,7-dimethyl-8-ribityllumazine synthase (HP0002) [Helicobacter pylori 26695] 156 COG0516 1-156 -92.800 48  [H] COG0054 Riboflavin synthase beta-chain
3 gi|15644637|ref|NP_206805.1| 2-dehydro-3-deoxyphosphooctonate aldolase (HP0003) [Helicobacter pylori 26695] 276 COG0516 2-276 -116.000 42  [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase
4 gi|15644638|ref|NP_206806.1| carbonic anhydrase (icfA) (HP0004) [Helicobacter pylori 26695] 221 COG0516 2-219 -99.100 23  [P] KOG1578 Predicted carbonic anhydrase involved in protection against oxidative damage
5 gi|15644639|ref|NP_206807.1| orotidine 5'-phosphate decarboxylase (HP0005) [Helicobacter pylori 26695] 227 COG0516 2-227 -112.000 33  [F] COG0284 Orotidine-5`-phosphate decarboxylase
6 gi|15644640|ref|NP_206808.1| pantoate--beta-alanine ligase (HP0006) [Helicobacter pylori 26695] 276 COG0516 1-276 -119.000 39  [H] COG0414 Panthothenate synthetase
7 gi|15646197|ref|NP_206811.1| outer membrane protein (HP0009) [Helicobacter pylori 26695] 634 COG0516 453-634 -9.630 13  [M] COG3637 Opacity protein and related surface antigens
8 gi|15644643|ref|NP_206812.1| chaperonin GroEL (HP0010) [Helicobacter pylori 26695] 546 COG0516 1-539 -157.000 61  [O] COG0459 Chaperonin GroEL (HSP60 family)
9 gi|15644644|ref|NP_206813.1| co-chaperonin GroES (HP0011) [Helicobacter pylori 26695] 118 COG0516 1-90 -49.000 38  [O] COG0234 Co-chaperonin GroES (HSP10)
10 gi|15644645|ref|NP_206814.1| DNA primase (HP0012) [Helicobacter pylori 26695] 559 COG0516 1-558 -123.000 26  [L] COG0358 DNA primase (bacterial type)
11 gi|15644646|ref|NP_206815.1| hypothetical protein (HP0013) [Helicobacter pylori 26695] 350 COG0516 2-347 -56.100 16  [J] COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain
12 gi|15644647|ref|NP_206816.1| hypothetical protein (HP0014) [Helicobacter pylori 26695] 275 COG0516 2-254 -8.260 18  [Q] COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)
13 gi|15644648|ref|NP_206817.1| hypothetical protein (HP0015) [Helicobacter pylori 26695] 93 COG0516 5-91 -9.780 17  [U] COG3838 Type IV secretory pathway, VirB2 components (pilins)
14 gi|15644649|ref|NP_206818.1| hypothetical protein (HP0016) [Helicobacter pylori 26695] 87 COG0516 11-86 -16.400 [U] COG3702 Type IV secretory pathway, VirB3 components
15 gi|15644650|ref|NP_206819.1| virB4 homolog (virB4) (HP0017) [Helicobacter pylori 26695] 787 COG0516 257-778 -53.500 15  [U] COG3451 Type IV secretory pathway, VirB4 components
16 gi|15644651|ref|NP_206820.1| hypothetical protein (HP0018) [Helicobacter pylori 26695] 469 COG0516 1-469 -145.000 98  [S] COG3014 Uncharacterized protein conserved in bacteria
17 gi|15644652|ref|NP_206821.1| chemotaxis protein (cheV) (HP0019) [Helicobacter pylori 26695] 321 COG0516 1-198 -63.000 24  [NT] COG0835 Chemotaxis signal transduction protein
198-321 -23.800 20  [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
18 gi|15644653|ref|NP_206822.1| carboxynorspermidine decarboxylase (nspC) (HP0020) [Helicobacter pylori 26695] 405 COG0516 5-405 -22.100 15  [E] COG0019 Diaminopimelate decarboxylase
19 gi|15644654|ref|NP_206823.1| lipid A 1-phosphatase (HP0021) [Helicobacter pylori 26695] 190 COG0516 23-190 -47.600 14  [S] KOG4268 Uncharacterized conserved protein containing PAP2 domain
20 gi|15644655|ref|NP_206824.1| lipid A phosphoethanolamine transferase (HP0022) [Helicobacter pylori 26695] 521 COG0516 2-521 -120.000 25  [R] COG2194 Predicted membrane-associated, metal-dependent hydrolase


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.