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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1653next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB (HP0001) [Helicobacter pylori 26695] 138 JCSG0516 1-131 -29.800 18  SP1512A YP_194179.1 411796 Purified-2010-09-29
2 gi|15644636|ref|NP_206804.1| 6,7-dimethyl-8-ribityllumazine synthase (HP0002) [Helicobacter pylori 26695] 156 JCSG0516 1-156 -97.300 41  TM1825 TM1825 283678 Purified-2001-12-11
3 gi|15644637|ref|NP_206805.1| 2-dehydro-3-deoxyphosphooctonate aldolase (HP0003) [Helicobacter pylori 26695] 276 JCSG0516 7-276 -41.500 30  TM0343 TM0343 282218 PDB-2005-02-14
4 gi|15644638|ref|NP_206806.1| carbonic anhydrase (icfA) (HP0004) [Helicobacter pylori 26695] 221 JCSG0516 18-109 -8.030 15  YDR428C YDR428C 354901 PDB-2004-05-20
5 gi|15644639|ref|NP_206807.1| orotidine 5'-phosphate decarboxylase (HP0005) [Helicobacter pylori 26695] 227 JCSG0516 1-227 -85.300 29  TM0332 TM0332 282207 PDB-2005-01-04
6 gi|15644640|ref|NP_206808.1| pantoate--beta-alanine ligase (HP0006) [Helicobacter pylori 26695] 276 JCSG0516 1-276 -127.000 42  TM1077 TM1077 282944 Purified-2001-12-12
7 gi|15646197|ref|NP_206811.1| outer membrane protein (HP0009) [Helicobacter pylori 26695] 634 JCSG0516 4-632 -13.700 SP17586A YP_974743.1 412301 Selected-2009-11-12
283-634 -56.800 23  RH20376A NP_208292.1 416152 Selected-2009-12-04
8 gi|15644643|ref|NP_206812.1| chaperonin GroEL (HP0010) [Helicobacter pylori 26695] 546 JCSG0516 1-534 -154.000 59  TM0506 TM0506 282379 Purified-2001-12-06
9 gi|15644644|ref|NP_206813.1| co-chaperonin GroES (HP0011) [Helicobacter pylori 26695] 118 JCSG0516 1-91 -54.000 40  TM0505 TM0505 282378 Crystal|NMR-2002-07-01
10 gi|15644645|ref|NP_206814.1| DNA primase (HP0012) [Helicobacter pylori 26695] 559 JCSG0516 1-558 -122.000 26  TM1452 TM1452 283310 Selected-2001-10-12
11 gi|15644646|ref|NP_206815.1| hypothetical protein (HP0013) [Helicobacter pylori 26695] 350 JCSG0516 2-349 -94.800 34  SP9715A ZP_02993753.1 410385 Purified-2010-09-29
12 gi|15644647|ref|NP_206816.1| hypothetical protein (HP0014) [Helicobacter pylori 26695] 275 JCSG0516 1-275 -134.000 100  RH20375A NP_206816.1 416151 Selected-2009-12-04
13 gi|15644648|ref|NP_206817.1| hypothetical protein (HP0015) [Helicobacter pylori 26695] 93 JCSG0516 1-41 -7.540 SP17982A NP_371336.1 413591 Selected-2009-11-12
14 gi|15644649|ref|NP_206818.1| hypothetical protein (HP0016) [Helicobacter pylori 26695] 87 JCSG0516 1-28 -6.800 10  TM1487 TM1487 283344 Purified-2001-11-13
15 gi|15644650|ref|NP_206819.1| virB4 homolog (virB4) (HP0017) [Helicobacter pylori 26695] 787 JCSG0516 3-767 -66.200 13  SP14324A YP_001088362.1 410039 Selected-2009-11-12
16 gi|15644651|ref|NP_206820.1| hypothetical protein (HP0018) [Helicobacter pylori 26695] 469 JCSG0516 1-254 -31.100 17  SP11148B ZP_02433752.1 410301 Purified-2010-09-29
30-358 -20.200 MA2004C 13278497 399832 Selected-2008-12-22
17 gi|15644652|ref|NP_206821.1| chemotaxis protein (cheV) (HP0019) [Helicobacter pylori 26695] 321 JCSG0516 9-321 -98.200 22  GD10678B RER070207001006 388606 Selected-2007-09-21
18 gi|15644653|ref|NP_206822.1| carboxynorspermidine decarboxylase (nspC) (HP0020) [Helicobacter pylori 26695] 405 JCSG0516 1-405 -147.000 100  XB5406A 2313093 358544 Purified-2005-03-29
19 gi|15644654|ref|NP_206823.1| lipid A 1-phosphatase (HP0021) [Helicobacter pylori 26695] 190 JCSG0516 37-189 -53.000 17  C.JNH21312E ZP_01995411.1 430135 Selected-2013-07-30
20 gi|15644655|ref|NP_206824.1| lipid A phosphoethanolamine transferase (HP0022) [Helicobacter pylori 26695] 521 JCSG0516 1-518 -22.100 12  TT16481A NP_743993.1 404410 Selected-2009-08-14


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.