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anford Burnham Prebys Medical Discovery Institute
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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 55674next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 sp|Q29940|1B59_HUMAN(removed signalp:1-24) HLA class I histocompatibility antigen, B-59 alpha chain OS=Homo sapiens GN=HLA-B PE=2 SV=1 338 JCSG0516 51-278 -12.100 21  RC21383B RAB54_HC 430680 Cloned-2014-07-04
2 sp|P08908|5HT1A_HUMAN 5-hydroxytryptamine receptor 1A OS=Homo sapiens GN=HTR1A PE=1 SV=3 422 JCSG0516 67-345 -9.570 SP2363M YP_001297548.1 409804 Purified-2010-09-29
3 sp|Q15758|AAAT_HUMAN Neutral amino acid transporter B(0) OS=Homo sapiens GN=SLC1A5 PE=1 SV=2 541 JCSG0516 55-483 -7.130 14  MA2504B NP_004061.3 400119 Selected-2008-12-22
4 sp|P61221|ABCE1_HUMAN ATP-binding cassette sub-family E member 1 OS=Homo sapiens GN=ABCE1 PE=1 SV=1 599 JCSG0516 1-599 -172.000 100  MA0027A 13529349 399876 Purified-2009-03-14
5 sp|P07108|ACBP_HUMAN Acyl-CoA-binding protein OS=Homo sapiens GN=DBI PE=1 SV=2 87 JCSG0516 29-67 -6.560 17  SP19244A YP_095193.1 412198 Purified-2010-09-29
6 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 1-300) 300 JCSG0516 33-300 -13.300 16  MA1177E NP_082313.2 400042 Selected-2008-12-22
7 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 151-450) 300 JCSG0516 1-292 -17.800 21  MA1177E NP_082313.2 400042 Selected-2008-12-22
8 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 301-600) 300 JCSG0516 2-178 -7.800 17  MA1177E NP_082313.2 400042 Selected-2008-12-22
9 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 451-700) 250 JCSG0516 7-216 -6.040 11  RH20424A NP_987876.1 416292 Selected-2009-12-04
10 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 1-300) 300 JCSG0516 33-300 -22.000 13  SP19064A YP_094096.1 412109 Selected-2009-11-12
11 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 151-450) 300 JCSG0516 12-273 -25.300 14  SP19064A YP_094096.1 412109 Selected-2009-11-12
12 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 301-600) 300 JCSG0516 1-274 -11.100 11  SP19064A YP_094096.1 412109 Selected-2009-11-12
8-73 -12.300 14  SP13134B YP_194247.1 411803 Selected-2009-11-12
13 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 451-750) 300 JCSG0516 3-218 -7.260 11  HN13881A NM_016256.3 423397 Cloned-2013-04-04
14 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 601-900) 300 JCSG0516 1-300 -9.980 10  SP2600M ZP_02027330.1 411361 Selected-2009-11-12
5-68 -12.200 25  HN13881A NM_016256.3 423397 Cloned-2013-04-04
123-298 -11.300 14  RF20596A.MYBBP1A BC050546 421207 Purified-2010-12-07
15 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 751-930) 180 JCSG0516 2-179 -25.300 11  RF20596A.MYBBP1A BC050546 421207 Purified-2010-12-07
16 sp|P11766|ADHX_HUMAN Alcohol dehydrogenase class-3 OS=Homo sapiens GN=ADH5 PE=1 SV=4 374 JCSG0516 6-373 -71.300 26  TM0436 TM0436 282309 PDB-2003-12-02
17 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 1-300) 300 JCSG0516 9-300 -18.000 SP17586C NP_439153.1 411588 Selected-2009-11-12
81-299 -20.100 RF20596A.MYBBP1A BC050546 421207 Purified-2010-12-07
18 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 151-450) 300 JCSG0516 3-286 -15.500 10  RF20622A.ZCCHC8 BC065918 421231 Purified-2010-12-01
19 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 301-600) 300 JCSG0516 19-273 -15.100 TT0527A YP_322606.1 404770 Selected-2009-08-14
74-278 -18.300 12  TT0445A YP_001812673.1 404662 Selected-2009-08-14
107-274 -49.200 18  XB5526A 10640503 358664 Purified-2005-03-30
20 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 451-750) 300 JCSG0516 7-124 -37.200 14  XB5526A 10640503 358664 Purified-2005-03-30


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.