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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 182next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508; 217 HGM_OVER 1-217 -24.400 13  PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;
2 HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920; 360 HGM_OVER 63-177 -6.860 12  HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;
3 HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000; 81 HGM_OVER 8-81 -2.600 15  PB017610 Q11T14_CYTH3/22-188 PB017610; Pfam-B_17610;
4 HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074; 227 HGM_OVER 1-133 -3.550 10  PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;
5 HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833; 173 HGM_OVER 15-118 -3.580 PB038401 Q8RFH0_FUSNN/1-210 PB038401; Pfam-B_38401;
6 HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473; 223 HGM_OVER 22-220 -9.160 10  PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;
7 HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024; 121 HGM_OVER 3-121 -4.410 PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)
8 HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066; 164 HGM_OVER 28-164 -5.860 11  PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]
9 HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178; 122 HGM_OVER 4-103 -16.900 21  HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;
10 HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304; 200 HGM_OVER 9-131 -4.320 18  PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;
11 HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397; 274 HGM_OVER 198-249 -4.340 10  HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;
12 HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411; 255 HGM_OVER 200-254 -4.640 10  PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]
13 HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523; 127 HGM_OVER 51-127 -4.280 16  PB028090 gi|167758043|ref|ZP_02430170.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]gi|167663940|gb|EDS08070.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]
14 HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561; 136 HGM_OVER 41-135 -16.900 21  HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;
15 HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574; 92 HGM_OVER 60-89 -3.240 10  PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]
16 HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580; 203 HGM_OVER 112-202 -4.650 14  PB002776 gi|157737147|ref|YP_001489830.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]gi|157699001|gb|ABV67161.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]
17 HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636; 115 HGM_OVER 6-49 -6.170 PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;
18 HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669; 125 HGM_OVER 13-125 -3.240 10  PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;
19 HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679; 172 HGM_OVER 59-167 -3.410 PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;
20 HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709; 112 HGM_OVER 6-62 -8.450 28  HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.