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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 182next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508; 217 JCSG0516 1-217 -79.800 22  PX14351B NP_809182.1 395667 PDB-2009-05-07
2 HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920; 360 JCSG0516 3-335 -22.000 18  SP0025A ZP_01961960.1 406818 Selected-2009-11-12
14-187 -36.600 28  TM0025 TM0025 281906 Purified-2001-01-30
3 HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000; 81 JCSG0516 1-81 -33.300 29  RH20388A ZP_02068619.1 416187 Selected-2009-12-04
4 HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074; 227 JCSG0516 11-76 -6.620 10  SC.B21156A NP_600558.1 427828 Selected-2013-01-04
5 HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833; 173 JCSG0516 1-173 -39.400 17  PJ07804U NP_878967.1 374769 Crystal|NMR-2007-04-13
6 HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473; 223 JCSG0516 1-222 -27.300 10  SC.B21047A YP_001338106.1 428388 Selected-2013-01-04
7 HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024; 121 JCSG0516 6-121 -41.500 40  GD5925A RER070207000754 388731 Selected-2007-09-21
8 HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066; 164 JCSG0516 4-114 -7.880 15  TM0665 TM0665 282537 PDB-2002-07-09
9 HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178; 122 JCSG0516 4-49 -8.470 13  SP18393A NP_720841.1 413750 Purified-2010-09-29
10 HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304; 200 JCSG0516 4-200 -93.100 41  RH8691B NP_283817.1 415755 Selected-2009-12-04
11 HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397; 274 JCSG0516 133-197 -7.910 16  SP16518A YP_001713490.1 406299 Purified-2010-09-29
12 HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411; 255 JCSG0516 1-67 -7.920 21  SP16953A ZP_02035740.1 407268 Purified-2010-09-29
13 HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523; 127 JCSG0516 24-127 -6.540 17  SP17522A ZP_02043720.1 406582 Purified-2010-09-29
14 HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561; 136 JCSG0516 37-128 -7.890 14  SP18829A NP_814273.1 410827 Purified-2010-09-29
15 HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574; 92 JCSG0516 1-91 -35.400 24  TB1313D 13424859 357018 Purified-2004-07-22
16 HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580; 203 JCSG0516 11-177 -17.200 17  FR14995A NP_979012.1 392879 Crystal|NMR-2009-06-15
17 HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636; 115 JCSG0516 1-90 -9.590 17  SP18706A ZP_01994502.1 410744 Selected-2009-11-12
18 HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669; 125 JCSG0516 1-109 -7.810 16  FL10792A YP_325043.1 376107 Crystal|NMR-2007-06-23
19 HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679; 172 JCSG0516 1-172 -41.000 20  SP16554F YP_001303689.1 412633 Selected-2009-11-12
20 HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709; 112 JCSG0516 3-108 -9.560 17  C.LS21349A NP_420460.1 430467 Purified-2014-07-08


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.