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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 19629next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 CE21227 CE21227 1315 PDB-2004-06-11 525 H.sapiens 8-524 -144.000 53  sp|Q9NPH2|INO1_HUMAN Inositol-3-phosphate synthase 1 OS=Homo sapiens GN=ISYNA1 PE=1 SV=1
2 TM0001 TM0001 281882 Purified-2001-08-24 41 H.sapiens 15-22 -6.870 75  sp|Q8NEQ6|CA064_HUMAN Uncharacterized protein C1orf64 OS=Homo sapiens GN=C1orf64 PE=2 SV=1
3 TM0002 TM0002 281883 Purified-2001-08-29 41 H.sapiens 3-40 -4.990 22  sp|P46379|BAT3_HUMAN Large proline-rich protein BAT3 OS=Homo sapiens GN=BAT3 PE=1 SV=2 (Range: 751-1050)
4 TM0003 TM0003 281884 Purified-2001-12-06 40 H.sapiens 2-34 -4.490 29  sp|Q9H6U8|ALG9_HUMAN Alpha-1,2-mannosyltransferase ALG9 OS=Homo sapiens GN=ALG9 PE=1 SV=2 (Range: 1-300)
5 TM0004 TM0004 281885 Purified-2004-07-19 31 H.sapiens 6-16 -5.790 sp|Q6EEV4|GL1AD_HUMAN Protein GRINL1A, isoforms 4/5 OS=Homo sapiens GN=GRINL1A PE=2 SV=1
6 TM0005 TM0005 281886 Purified-2001-01-30 650 H.sapiens 2-278 -69.100 33  sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3 (Range: 1-300)
135-455 -89.400 36  sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3 (Range: 151-450)
339-638 -97.500 34  sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2 (Range: 601-900)
7 TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13 345 H.sapiens 1-345 -39.000 16  sp|Q7L5Y1|ENOF1_HUMAN Mitochondrial enolase superfamily member 1 OS=Homo sapiens GN=ENOSF1 PE=1 SV=1
8 TM0007 TM0007 281888 Purified-2004-07-19 438 H.sapiens 111-380 -23.500 12  sp|Q8NBH2|KY_HUMAN Kyphoscoliosis peptidase OS=Homo sapiens GN=KY PE=1 SV=1
310-437 -11.500 14  sp|P00488|F13A_HUMAN Coagulation factor XIII A chain OS=Homo sapiens GN=F13A1 PE=1 SV=4 (Range: 301-600)
9 TM0008 TM0008 281889 Crystal|NMR-2001-04-01 224 H.sapiens 29-189 -6.250 12  sp|P21964|COMT_HUMAN(removed signalp:1-32) Catechol O-methyltransferase OS=Homo sapiens GN=COMT PE=1 SV=2
10 TM0009 TM0009 281890 Purified-2001-02-14 142 H.sapiens 4-136 -15.500 16  sp|Q99807|COQ7_HUMAN Ubiquinone biosynthesis protein COQ7 homolog OS=Homo sapiens GN=COQ7 PE=1 SV=3
11 TM0010 TM0010 281891 Purified-2005-03-03 607 H.sapiens 78-538 -102.000 35  sp|P49821|NDUV1_HUMAN NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Homo sapiens GN=NDUFV1 PE=1 SV=4
511-597 -13.200 27  sp|O00217|NDUS8_HUMAN(removed signalp:1-19) NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Homo sapiens GN=NDUFS8 PE=1 SV=1
12 TM0011 TM0011 281892 Purified-2004-02-02 128 H.sapiens 3-119 -15.400 17  sp|P19404|NDUV2_HUMAN(removed signalp:1-11) NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Homo sapiens GN=NDUFV2 PE=1 SV=2
13 TM0012 TM0012 281893 Purified-2001-08-29 176 H.sapiens 1-174 -76.800 30  sp|P19404|NDUV2_HUMAN(removed signalp:1-11) NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Homo sapiens GN=NDUFV2 PE=1 SV=2
14 TM0013 TM0013 281894 Purified-2001-08-24 253 H.sapiens 29-237 -25.600 15  sp|Q68D91|MBLC2_HUMAN Metallo-beta-lactamase domain-containing protein 2 OS=Homo sapiens GN=MBLAC2 PE=1 SV=3
15 TM0014 TM0014 281895 Purified-2001-01-30 278 H.sapiens 14-273 -20.800 sp|Q9Y4G6|TLN2_HUMAN Talin-2 OS=Homo sapiens GN=TLN2 PE=1 SV=4 (Range: 1801-2100)
16 TM0015 TM0015 281896 PDB-2007-09-14 192 H.sapiens 1-184 -8.690 11  sp|Q9P0Z9|SOX_HUMAN Peroxisomal sarcosine oxidase OS=Homo sapiens GN=PIPOX PE=2 SV=2
17 TM0016 TM0016 281897 Purified-2001-08-24 101 H.sapiens 28-100 -24.300 34  sp|O00217|NDUS8_HUMAN(removed signalp:1-19) NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Homo sapiens GN=NDUFS8 PE=1 SV=1
18 TM0017 TM0017 281898 Purified-2003-03-05 394 H.sapiens 265-368 -8.680 13  sp|Q9H0I9|TKTL2_HUMAN Transketolase-like protein 2 OS=Homo sapiens GN=TKTL2 PE=1 SV=1 (Range: 451-626)
19 TM0018 TM0018 281899 Purified-2001-08-24 324 H.sapiens 35-226 -6.770 sp|A1L0T0|ILVBL_HUMAN(removed signalp:1-28) Acetolactate synthase-like protein OS=Homo sapiens GN=ILVBL PE=1 SV=2 (Range: 301-600)
20 TM0019 TM0019 281900 Crystal|NMR-2004-03-31 256 H.sapiens 2-250 -89.500 34  sp|Q9BPX1|DHB14_HUMAN 17-beta-hydroxysteroid dehydrogenase 14 OS=Homo sapiens GN=HSD17B14 PE=1 SV=1


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.