current user: public

anford Burnham Prebys Medical Discovery Institute
Please be advised that due to the planned maintenance our websites might be temporarily unavailable on December 17-18, 2018. We apologise for the inconvenience that this may cause.

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 689next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|13507740|ref|NP_109689.1| DNA polymerase III beta subunit MPN001 [Mycoplasma pneumoniae M129] 380 COG0516 1-380 -82.600 20  [L] COG0592 DNA polymerase sliding clamp subunit (PCNA homolog)
H.sapiens 133-377 -8.360 12  sp|Q6WBX8|RAD9B_HUMAN Cell cycle checkpoint control protein RAD9B OS=Homo sapiens GN=RAD9B PE=1 SV=2
HGM_OVER 1-319 -1.800 11  PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;
JCSG0516 1-380 -91.200 19  XB5465A NP_344555.1 358603 PDB-2005-08-31
NEW_HUMAN_DOMAINS 220-338 -4.670 13  tr|Q5T191|Q5T191_HUMAN FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae) OS=Homo sapiens GN=FLAD1 PE=2 SV=1 (Range: 1-138)
PDB0516 1-380 -91.400 19  2avt_A mol:protein length:378 DNA polymerase III beta subunit
PfamA30U 1-120 -43.500 18  PF00712.17; DPO3B_CAUCR/1-121; DNA polymerase III beta subunit, N-terminal domain
135-256 -39.100 12  PF02767.14; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain
258-380 -55.200 23  PF02768.13; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain
SCOP206 1-121 -49.200 18  d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}
129-257 -42.600 12  d4k3la2 d.131.1.1 (A:123-244) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
258-380 -51.500 22  d1vpka3 d.131.1.1 (A:244-366) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}
VFDB 246-333 -3.560 11  VFG001878(gi:52842095) (lspL) general secretion pathway protein L [<
2 gi|13507741|ref|NP_109690.1| DnaJ domain-containing protein MPN002 [Mycoplasma pneumoniae M129] 309 COG0516 2-309 -85.700 18  [O] COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain
H.sapiens 2-309 -78.600 16  sp|Q96EY1|DNJA3_HUMAN(removed signalp:1-21) DnaJ homolog subfamily A member 3, mitochondrial OS=Homo sapiens GN=DNAJA3 PE=1 SV=2
HGM_OVER 9-63 -5.780 19  PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
JCSG0516 2-307 -98.700 19  TM0849 TM0849 282719 Selected-2001-10-12
NEW_HUMAN_DOMAINS 1-59 -6.330 11  sp|Q9UBC1|IKBL1_HUMAN NF-kappa-B inhibitor-like protein 1 OS=Homo sapiens GN=NFKBIL1 PE=1 SV=1 (Range: 294-381)
PDB0516 2-298 -78.200 18  3lz8_A mol:protein length:329 Putative chaperone DnaJ
PfamA30U 2-61 -33.000 43  PF00226.29; Q22028_CAEEL/17-79; DnaJ domain
120-309 -48.200 12  PF01556.16; T0NBZ6_9EURY/129-343; DnaJ C terminal domain
SCOP206 2-76 -37.400 29  d2o37a_ a.2.3.0 (A:) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
134-222 -13.400 d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}
VFDB 11-58 -6.400 22  VFG002034(gi:13508191) (hmw3) cytadherence accessory protein HMW3 [Cytadherence organelle (VF0330)] [Mycoplasma pneumoniae M129]
3 gi|13507742|ref|NP_109691.1| DNA gyrase subunit B MPN003 [Mycoplasma pneumoniae M129] 650 COG0516 3-650 -156.000 47  [L] COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
H.sapiens 2-247 -52.100 22  sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3 (Range: 1-300)
87-408 -65.500 19  sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3 (Range: 151-450)
263-552 -76.600 26  sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3 (Range: 301-600)
411-650 -53.000 28  sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3 (Range: 451-750)
HGM_OVER 472-639 -3.720 21  HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;
JCSG0516 8-650 -198.000 48  TM0833 TM0833 282703 Purified-2005-04-05
NEW_HUMAN_DOMAINS 263-404 -6.780 sp|Q8N6G2|CM026_HUMAN Uncharacterized protein C13orf26 OS=Homo sapiens GN=C13orf26 PE=2 SV=1 (Range: 105-289)
PDB0516 2-649 -191.000 46  4juo_C mol:protein length:670 DNA topoisomerase 4 subunit B
PfamA30U 228-407 -82.300 41  PF00204.23; A9KS52_CLOPH/226-396; DNA gyrase B
548-645 -20.100 20  PF16898.3; K5XBZ3_PHACS/641-767; C-terminal associated domain of TOPRIM
577-639 -46.400 63  PF00986.19; M9X0E0_MANHA/738-800; DNA gyrase B subunit, carboxyl terminus
SCOP206 20-227 -87.700 53  d4k4oa1 d.122.1.0 (A:18-224) automated matches {Enterococcus faecalis [TaxId: 226185]}
228-409 -83.300 36  d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]}
430-629 -97.400 56  d3m4ia_ e.78.1.1 (A:) DNA gyrase beta-prime domain {Mycobacterium tuberculosis [TaxId: 1773]}
VFDB 3-546 -6.520 10  VFG000434(gi:17233482) (pefC) plasmid-encoded fimbriae usher protein PefC [Pef (VF0104)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
4 gi|13507743|ref|NP_109692.1| DNA gyrase subunit A MPN004 [Mycoplasma pneumoniae M129] 839 COG0516 16-836 -212.000 38  [L] COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
H.sapiens 17-216 -24.100 29  sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3 (Range: 601-900)
82-392 -57.400 24  sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3 (Range: 751-1050)
246-497 -30.600 15  sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3 (Range: 901-1200)
HGM_OVER 409-496 -3.370 10  PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)
JCSG0516 17-817 -206.000 40  TM1084 TM1084 282951 Purified-2001-04-24
NEW_HUMAN_DOMAINS 261-334 -5.140 21  sp|Q8WVD5|RN141_HUMAN RING finger protein 141 OS=Homo sapiens GN=RNF141 PE=1 SV=1 (Range: 1-78)
PDB0516 12-512 -149.000 52  4ddq_A mol:protein length:502 DNA gyrase subunit A
42-745 -130.000 33  1zvu_A mol:protein length:716 Topoisomerase IV subunit A
512-835 -68.200 31  3uc1_A mol:protein length:327 DNA gyrase subunit A
PfamA30U 44-483 -63.900 20  PF00521.18; A0A0D1DXS4_USTMA/785-1232; DNA gyrase/topoisomerase IV, subunit A
620-665 -13.200 28  PF03989.11; GYRA_HAEIN/641-686; DNA gyrase C-terminal domain, beta-propeller
SCOP206 42-498 -135.000 49  d3ilwa_ e.11.1.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}
512-817 -67.500 32  d4g3na_ b.68.10.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}
VFDB 52-644 -7.190 12  VFG000079(gi:16802278) (clpC) endopeptidase Clp ATP-binding chain C [ClpC (VF0072)] [Listeria monocytogenes EGD-e]
5 gi|13507744|ref|NP_109693.1| seryl-tRNA synthetase MPN005 [Mycoplasma pneumoniae M129] 420 COG0516 1-418 -134.000 43  [J] COG0172 Seryl-tRNA synthetase
H.sapiens 1-420 -118.000 27  sp|Q9NP81|SYSM_HUMAN Seryl-tRNA synthetase, mitochondrial OS=Homo sapiens GN=SARS2 PE=1 SV=1
HGM_OVER 255-361 -3.200 15  PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]
JCSG0516 1-416 -136.000 42  TM1379 TM1379 283240 Crystal|NMR-2004-06-10
NEW_HUMAN_DOMAINS 7-93 -5.420 14  sp|Q1X8D7|LRC36_HUMAN Leucine-rich repeat-containing protein 36 OS=Homo sapiens GN=LRRC36 PE=2 SV=2 (Range: 604-692)
PDB0516 1-420 -137.000 43  2dq3_A mol:protein length:425 Seryl-tRNA synthetase
PfamA30U 1-103 -24.300 23  PF02403.20; C5WTV8_SORBI/1-114; Seryl-tRNA synthetase N-terminal domain
SCOP206 1-109 -37.600 24  d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
113-416 -114.000 35  d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
VFDB 1-244 -11.600 12  VFG045487(gi:52840451) (ravF) Dot/Icm type IV secretion system effector RavF [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
6 gi|13507745|ref|NP_109694.1| thymidylate kinase MPN006 [Mycoplasma pneumoniae M129] 210 COG0516 3-207 -91.100 32  [F] COG0125 Thymidylate kinase
H.sapiens 1-207 -57.300 23  sp|P23919|KTHY_HUMAN Thymidylate kinase OS=Homo sapiens GN=DTYMK PE=1 SV=4
HGM_OVER 4-105 -3.360 PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;
JCSG0516 5-207 -84.700 33  TM1099 TM1099 282965 Purified-2003-11-26
NEW_HUMAN_DOMAINS 6-88 -6.610 15  sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2 (Range: 687-863)
PDB0516 1-208 -90.200 27  2ccg_A mol:protein length:225 THYMIDYLATE KINASE
PfamA30U 9-197 -87.700 34  PF02223.15; KTHY_BACSU/8-199; Thymidylate kinase
SCOP206 4-206 -88.900 27  d4hlca_ c.37.1.0 (A:) automated matches {Staphylococcus aureus [TaxId: 282458]}
VFDB 2-202 -9.530 13  VFG001988(gi:15792733) (cysC) adenylylsulfate kinase [Capsule (VF0323)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
7 gi|13507746|ref|NP_109695.1| DNA polymerase III subunit delta' MPN007 [Mycoplasma pneumoniae M129] 253 COG0516 2-253 -78.600 19  [L] COG2812 DNA polymerase III, gamma/tau subunits
H.sapiens 2-234 -31.700 sp|Q9Y230|RUVB2_HUMAN RuvB-like 2 OS=Homo sapiens GN=RUVBL2 PE=1 SV=3
HGM_OVER 50-129 -4.660 PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
JCSG0516 2-253 -81.000 16  TM0686 TM0686 282556 Purified-2001-02-28
NEW_HUMAN_DOMAINS 5-125 -7.040 sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2 (Range: 687-863)
PDB0516 2-204 -71.500 20  1njf_A mol:protein length:250 DNA polymerase III subunit gamma
2-252 -65.100 18  3glf_B mol:protein length:395 DNA polymerase III subunit tau
PfamA30U 1-185 -32.300 10  PF06068.11; RUVB2_CAEEL/17-408; TIP49 C-terminus
2-142 -75.400 27  PF13177.4; A5VIC8_LACRD/13-171; DNA polymerase III, delta subunit
5-251 -12.400 11  PF03215.13; RAD24_YEAST/58-575; Rad17 cell cycle checkpoint protein
SCOP206 2-204 -72.900 20  d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
VFDB 1-194 -13.200 VFG002380(gi:15611004) (eccA1) ESX-1 type VII secretion system AAA+ ATPase EccA1 [ESX-1 (VF0315)] [Mycobacterium tuberculosis H37Rv]
1-238 -13.100 VFG002401(gi:15608935) (eccA5) ESX-5 type VII secretion system AAA+ ATPase EccA5 [ESX-5 (VF0402)] [Mycobacterium tuberculosis H37Rv]
8 gi|13507747|ref|NP_109696.1| tRNA modification GTPase TrmE MPN008 [Mycoplasma pneumoniae M129] 442 COG0516 1-442 -111.000 28  [R] COG0486 Predicted GTPase
H.sapiens 3-442 -99.200 25  sp|Q969Y2|GTPB3_HUMAN tRNA modification GTPase GTPBP3, mitochondrial OS=Homo sapiens GN=GTPBP3 PE=2 SV=2
HGM_OVER 88-141 -3.820 HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;
JCSG0516 26-427 -24.600 13  TT0527A YP_322606.1 404770 Selected-2009-08-14
220-362 -26.200 23  MJ12771A YP_137184.1 403034 Purified-2009-10-17
NEW_HUMAN_DOMAINS 191-334 -5.820 sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2 (Range: 687-863)
PDB0516 1-442 -129.000 27  3gee_A mol:protein length:476 tRNA modification GTPase mnmE
PfamA30U 6-121 -59.200 41  PF10396.7; A4CKF7_ROBBH/5-124; GTP-binding protein TrmE N-terminus
124-439 -92.000 27  PF12631.5; D5XDU4_THEPJ/127-455; MnmE helical domain
SCOP206 5-121 -59.700 42  d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]}
122-442 -39.000 23  d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain {Thermotoga maritima [TaxId: 2336]}
217-362 -54.400 31  d2gj8a_ c.37.1.8 (A:) automated matches {Escherichia coli [TaxId: 469008]}
VFDB 218-361 -9.240 25  VFG001859(gi:52842863) (feoB) ferrous iron transporter B [FeoAB (VF0160)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
9 gi|13507748|ref|NP_109697.1| hydrolase MPN009 [Mycoplasma pneumoniae M129] 261 COG0516 1-261 -105.000 26  [L] COG0084 Mg-dependent DNase
H.sapiens 1-260 -94.900 22  sp|Q17R31|TATD3_HUMAN Putative deoxyribonuclease TATDN3 OS=Homo sapiens GN=TATDN3 PE=1 SV=1
HGM_OVER 39-254 -3.730 10  PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;
JCSG0516 3-261 -106.000 29  TM0667 TM0667 282539 PDB-2002-07-09
NEW_HUMAN_DOMAINS 177-260 -6.650 12  sp|P14543|NID1_HUMAN Nidogen-1 OS=Homo sapiens GN=NID1 PE=1 SV=3 (Range: 52-175)
PDB0516 2-261 -105.000 30  2gzx_A mol:protein length:265 putative TatD related DNase
PfamA30U 4-260 -95.000 29  PF01026.19; Y454_HAEIN/4-256; TatD related DNase
SCOP206 3-261 -106.000 29  d1j6oa1 c.1.9.12 (A:0-255) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]}
VFDB 3-260 -7.920 VFG001351(gi:22537332) (cpsB) CpsB phosphatase [Capsule (VF0274)] [Streptococcus agalactiae 2603V/R]
10 gi|13507749|ref|NP_109698.1| hypothetical protein MPN010 [Mycoplasma pneumoniae M129] 131 COG0516 51-126 -6.640 10  [S] COG5374 Uncharacterized conserved protein
H.sapiens 88-131 -8.130 16  sp|P07814|SYEP_HUMAN Bifunctional aminoacyl-tRNA synthetase OS=Homo sapiens GN=EPRS PE=1 SV=5 (Range: 751-1050)
HGM_OVER 61-131 -4.640 PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]
JCSG0516 69-131 -7.460 11  SP19108A NP_250641.1 413313 Selected-2009-11-12
NEW_HUMAN_DOMAINS 86-131 -6.090 13  sp|P55197|AF10_HUMAN Protein AF-10 OS=Homo sapiens GN=MLLT10 PE=1 SV=1 (Range: 886-1027)
PDB0516 46-130 -31.400 100  2ba2_A mol:protein length:85 Hypothetical UPF0134 protein MPN010
PfamA30U 37-130 -28.100 43  PF01519.14; Y137_MYCPN/43-170; Protein of unknown function DUF16 topsan
SCOP206 65-128 -6.180 26  d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
VFDB 57-127 -6.070 VFG045501(gi:52841161) (ravI) Dot/Icm type IV secretion system effector RavI [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
11 gi|13507750|ref|NP_109699.1|(removed signal:1-26) hypothetical protein MPN011 [Mycoplasma pneumoniae M129] 205 COG0516 16-94 -4.590 11  [S] COG5399 Uncharacterized protein conserved in archaea
H.sapiens 2-94 -6.330 sp|Q9NVL1|FA86C_HUMAN Protein FAM86C OS=Homo sapiens GN=FAM86C PE=2 SV=3
HGM_OVER 26-120 -3.830 12  PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
JCSG0516 2-71 -7.380 SP18739A ZP_02031627.1 413035 Purified-2012-12-06
NEW_HUMAN_DOMAINS 1-58 -6.630 12  sp|Q5VWM6|PRA13_HUMAN PRAME family member 13 OS=Homo sapiens GN=PRAMEF13 PE=3 SV=1 (Range: 1-122)
PDB0516 1-58 -6.590 17  1wjt_A mol:protein length:103 Transcription elongation factor S-II protein
PfamA30U 1-82 -39.100 30  PF00938.15; Y643_MYCPN/29-113; Lipoprotein
SCOP206 2-61 -8.900 10  d1yt3a2 a.60.8.3 (A:295-375) Ribonuclease D {Escherichia coli [TaxId: 562]}
VFDB 8-133 -6.140 VFG000750(gi:215276195) (bfpG) BFP biogenesis protein BfpG [BFP (VF0174)] [Escherichia coli O127:H6 str. E2348/69]
12 gi|13507751|ref|NP_109700.1|(removed signal:1-21) hypothetical protein MPN012 [Mycoplasma pneumoniae M129] 214 COG0516 3-109 -4.810 14  [R] KOG4357 Uncharacterized conserved protein (involved in mesoderm differentiation in humans)
H.sapiens 17-154 -6.560 14  sp|Q9HCK5|AGO4_HUMAN Protein argonaute-4 OS=Homo sapiens GN=EIF2C4 PE=1 SV=2 (Range: 1-300)
HGM_OVER 1-90 -3.900 11  HGC00803 gi|163280588|dbj|BABD01030100.1|2.0 TMP01051;
JCSG0516 6-75 -7.870 SP18739A ZP_02031627.1 413035 Purified-2012-12-06
NEW_HUMAN_DOMAINS 6-72 -6.090 10  sp|Q8TD43|TRPM4_HUMAN Transient receptor potential cation channel subfamily M member 4 OS=Homo sapiens GN=TRPM4 PE=1 SV=1 (Range: 553-687)
PDB0516 17-74 -6.490 15  2rf0_A mol:protein length:89 Mitogen-activated protein kinase kinase kinas
PfamA30U 1-86 -40.300 26  PF00938.15; Y643_MYCPN/29-113; Lipoprotein
SCOP206 1-65 -8.830 d1yt3a2 a.60.8.3 (A:295-375) Ribonuclease D {Escherichia coli [TaxId: 562]}
VFDB 2-135 -5.330 19  VFG045510(gi:52841345) (ravN) Dot/Icm type IV secretion system effector RavN [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
13 gi|13507752|ref|NP_109701.1| hypothetical protein MPN013 [Mycoplasma pneumoniae M129] 257 COG0516 2-127 -12.200 13  [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
42-120 -12.500 16  [W] KOG3544 Collagens (type IV and type XIII), and related proteins
143-257 -12.500 15  [S] COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain
H.sapiens 2-126 -30.300 10  sp|Q8NA70|FA47B_HUMAN Protein FAM47B OS=Homo sapiens GN=FAM47B PE=2 SV=2 (Range: 1-300)
41-194 -23.600 sp|Q8IWE5|PKHM2_HUMAN Pleckstrin homology domain-containing family M member 2 OS=Homo sapiens GN=PLEKHM2 PE=1 SV=2 (Range: 451-750)
50-135 -39.300 22  sp|P84157|MXRA7_HUMAN(removed signalp:1-33) Matrix-remodeling-associated protein 7 OS=Homo sapiens GN=MXRA7 PE=1 SV=1
HGM_OVER 145-257 -7.930 12  PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]
JCSG0516 27-145 -25.200 11  SP2003J ZP_02995359.1 410412 Selected-2009-11-12
42-115 -40.500 18  SP17784A ZP_02421200.1 411248 Crystal|NMR-2013-05-16
51-257 -22.000 15  SP16877B YP_001303840.1 412644 Selected-2009-11-12
NEW_HUMAN_DOMAINS 45-123 -30.400 11  sp|P18583|SON_HUMAN Protein SON OS=Homo sapiens GN=SON PE=1 SV=4 (Range: 606-751)
PDB0516 2-117 -17.300 4cwu_T mol:protein length:368 CORE-CAPSID BRIDGING PROTEIN
43-124 -26.000 25  1wck_A mol:protein length:220 BCLA PROTEIN
44-158 -24.000 12  4hsi_A mol:protein length:703 Envelope glycoprotein B
164-257 -13.300 14  3u59_A mol:protein length:101 Tropomyosin beta chain
PfamA30U 6-177 -13.600 PF05934.9; CLCC1_RAT/3-541; Mid-1-related chloride channel (MCLC)
44-132 -24.600 18  PF15708.3; G7PVG9_MACFA/1-223; Proline-rich protein family 20
171-255 -13.400 27  PF01519.14; Y137_MYCPN/43-170; Protein of unknown function DUF16 topsan
SCOP206 77-104 -8.060 14  d1k28a2 b.108.1.2 (A:362-576) Tail-associated lysozyme gp5, C-terminal domain {Bacteriophage T4 [TaxId: 10665]}
VFDB 2-155 -18.900 15  VFG001283(gi:21284150) (fnbA) fibronectin-binding protein A [FnBPs (VF0010)] [Staphylococcus aureus subsp. aureus MW2]
2-257 -16.200 VFG000337(gi:16272928) (iga1) immunoglobin A1 protease [IgA1 protease (VF0045)] [Haemophilus influenzae Rd KW20]
27-132 -26.800 17  VFG002036(gi:13508192) (p30/p32) 30K adhesin-related protein [Cytadherence organelle (VF0330)] [Mycoplasma pneumoniae M129]
14 gi|13507753|ref|NP_109702.1| hypothetical protein MPN014 [Mycoplasma pneumoniae M129] 212 COG0516 2-210 -61.700 18  [L] COG0358 DNA primase (bacterial type)
H.sapiens 18-211 -29.200 14  sp|Q96RR1|PEO1_HUMAN(removed signalp:1-19) Twinkle protein, mitochondrial OS=Homo sapiens GN=PEO1 PE=1 SV=1 (Range: 151-450)
HGM_OVER 58-197 -4.220 HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;
JCSG0516 2-210 -66.300 23  TM1452 TM1452 283310 Selected-2001-10-12
NEW_HUMAN_DOMAINS 68-169 -4.530 10  sp|Q5TEA3|CT194_HUMAN Uncharacterized protein C20orf194 OS=Homo sapiens GN=C20orf194 PE=2 SV=1 (Range: 534-647)
PDB0516 2-211 -75.800 21  4e2k_A mol:protein length:329 DNA primase
PfamA30U 2-101 -42.600 15  PF08275.9; Q8F416_LEPIN/119-248; DNA primase catalytic core, N-terminal domain
108-195 -44.200 27  PF13155.4; Q8EPY5_OCEIH/263-348; Toprim-like
SCOP206 2-210 -66.700 20  d1dd9a_ e.13.1.1 (A:) DNA primase DnaG catalytic core {Escherichia coli [TaxId: 562]}
VFDB 5-209 -8.660 15  VFG045552(gi:52842203) (lpg1986) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
15 gi|13507754|ref|NP_109703.1| hypothetical protein MPN015 [Mycoplasma pneumoniae M129] 285 COG0516 1-280 -29.500 16  [HJ] COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)
H.sapiens 8-283 -72.900 16  sp|Q8IXN7|RIMKA_HUMAN Ribosomal protein S6 modification-like protein A OS=Homo sapiens GN=RIMKLA PE=2 SV=2
HGM_OVER 179-282 -2.740 PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;
JCSG0516 9-284 -67.500 18  PU9803J YP_001095162.1 381332 Crystal|NMR-2007-12-14
NEW_HUMAN_DOMAINS 77-189 -6.040 11  sp|Q66K74|MAP1S_HUMAN Microtubule-associated protein 1S OS=Homo sapiens GN=MAP1S PE=1 SV=2 (Range: 328-458)
PDB0516 9-277 -70.900 16  3vpb_A mol:protein length:282 Putative acetylornithine deacetylase
PfamA30U 1-273 -33.600 11  PF05770.9; ITPK1_ORYSJ/37-341; Inositol 1, 3, 4-trisphosphate 5/6-kinase
92-271 -64.600 17  PF08443.9; RIMK_HAEIN/105-293; RimK-like ATP-grasp domain
SCOP206 13-94 -16.200 12  d3vpda1 c.30.1.0 (A:1-88) automated matches {Thermus thermophilus [TaxId: 274]}
95-276 -61.600 14  d3vpda2 d.142.1.7 (A:89-281) automated matches {Thermus thermophilus [TaxId: 274]}
VFDB 80-267 -5.990 13  VFG001966(gi:15792756) (Cj1438c) sugar transferase [Capsule (VF0323)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
16 gi|13507755|ref|NP_109704.1| ribosomal S6 modification protein MPN016 [Mycoplasma pneumoniae M129] 288 COG0516 1-288 -29.100 20  [HJ] COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)
H.sapiens 2-288 -75.400 22  sp|Q8IXN7|RIMKA_HUMAN Ribosomal protein S6 modification-like protein A OS=Homo sapiens GN=RIMKLA PE=2 SV=2
HGM_OVER 154-287 -4.780 PB015954 Q6WBB3_BIFBR/1-225 PB015954; Pfam-B_15954;
JCSG0516 8-288 -72.900 21  PU9803C NP_873685.1 381379 Purified-2007-10-11
NEW_HUMAN_DOMAINS 124-217 -5.220 17  sp|Q9ULM3|YETS2_HUMAN YEATS domain-containing protein 2 OS=Homo sapiens GN=YEATS2 PE=1 SV=2 (Range: 1321-1422)
PDB0516 8-288 -74.900 23  4iwx_A mol:protein length:320 Ribosomal protein S6 modification protein
PfamA30U 6-287 -30.500 12  PF05770.9; ITPK1_ORYSJ/37-341; Inositol 1, 3, 4-trisphosphate 5/6-kinase
90-287 -68.500 24  PF08443.9; RIMK_HAEIN/105-293; RimK-like ATP-grasp domain
SCOP206 13-92 -18.000 12  d3vpda1 c.30.1.0 (A:1-88) automated matches {Thermus thermophilus [TaxId: 274]}
93-288 -61.000 19  d3vpda2 d.142.1.7 (A:89-281) automated matches {Thermus thermophilus [TaxId: 274]}
VFDB 194-285 -5.060 VFG002249(gi:49476210) (trwN) Trw type IV secretion sysmtem trwN protein [Trw type IV secretion system (VF0372)] [Bartonella henselae str. Houston-1]
17 gi|13507756|ref|NP_109705.1| 5,10-methylene-tetrahydrofolate dehydrogenase MPN017 [Mycoplasma pneumoniae M129] 269 COG0516 2-266 -110.000 29  [H] COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
H.sapiens 2-268 -105.000 29  sp|P11586|C1TC_HUMAN C-1-tetrahydrofolate synthase, cytoplasmic OS=Homo sapiens GN=MTHFD1 PE=1 SV=3 (Range: 1-300)
HGM_OVER 145-255 -3.590 16  PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;
JCSG0516 1-267 -103.000 28  TM1767 TM1767 283621 Purified-2001-12-11
NEW_HUMAN_DOMAINS 225-268 -16.500 sp|Q6UB35|C1TM_HUMAN Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Homo sapiens GN=MTHFD1L PE=1 SV=1 (Range: 298-355)
PDB0516 2-267 -114.000 29  3p2o_A mol:protein length:285 Bifunctional protein folD
PfamA30U 2-111 -57.100 32  PF00763.21; FOLD_BACSK/6-121; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
121-264 -75.500 27  PF02882.17; FOLD1_ARATH/184-349; Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
SCOP206 2-112 -57.600 33  d4b4ua1 c.58.1.0 (A:1-121) automated matches {Acinetobacter baumannii [TaxId: 575584]}
120-265 -77.100 28  d4b4ua2 c.2.1.0 (A:122-282) automated matches {Acinetobacter baumannii [TaxId: 575584]}
VFDB 138-235 -5.190 18  VFG000934(gi:26246575) (entA) 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
18 gi|13507757|ref|NP_109706.1|(removed signal:1-25) transport ATP-binding protein MPN018 [Mycoplasma pneumoniae M129] 598 COG0516 2-598 -88.100 24  [U] KOG0058 Peptide exporter, ABC superfamily
48-590 -90.900 25  [V] COG1132 ABC-type multidrug transport system, ATPase and permease components
H.sapiens 77-377 -42.000 17  sp|Q03518|TAP1_HUMAN Antigen peptide transporter 1 OS=Homo sapiens GN=TAP1 PE=1 SV=2 (Range: 301-600)
164-477 -55.600 19  sp|Q9NUT2|ABCB8_HUMAN ATP-binding cassette sub-family B member 8, mitochondrial OS=Homo sapiens GN=ABCB8 PE=1 SV=3 (Range: 301-600)
194-510 -67.300 25  sp|Q03519|TAP2_HUMAN(removed signalp:1-28) Antigen peptide transporter 2 OS=Homo sapiens GN=TAP2 PE=1 SV=1 (Range: 301-600)
312-596 -72.900 31  sp|Q9NP78|ABCB9_HUMAN(removed signalp:1-23) ATP-binding cassette sub-family B member 9 OS=Homo sapiens GN=ABCB9 PE=1 SV=1 (Range: 451-743)
HGM_OVER 377-591 -4.550 12  HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;
JCSG0516 1-596 -140.000 31  TM0287 TM0287 282163 Purified-2001-02-27
NEW_HUMAN_DOMAINS 291-385 -4.230 10  sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3 (Range: 217-335)
PDB0516 1-596 -141.000 31  4q4j_A mol:protein length:587 ABC transporter
PfamA30U 1-265 -12.700 12  PF13748.4; G8PNQ8_PSEUV/20-254; ABC transporter transmembrane region
55-307 -10.200 15  PF00664.21; ABCC8_CRICR/318-590; ABC transporter transmembrane region
358-517 -28.400 24  PF00005.25; YTFR_ECOLI/25-174; ABC transporter
SCOP206 2-324 -36.800 16  d4a82a1 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Human (Homo sapiens) [TaxId: 9606]}
362-589 -94.400 37  d4q7ka_ c.37.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}
VFDB 3-592 -79.800 20  VFG001269(gi:33591935) (cyaB) cyclolysin secretion ATP-binding protein [Cya (VF0028)] [Bordetella pertussis Tohama I]
48-590 -91.800 26  VFG013248(gi:16272034) (msbA) lipid transporter ATP-binding/permease [LOS (CVF494)] [Haemophilus influenzae Rd KW20]
19 gi|13507758|ref|NP_109707.1| transport ATP-binding protein MPN019 [Mycoplasma pneumoniae M129] 634 COG0516 28-634 -106.000 28  [V] COG1132 ABC-type multidrug transport system, ATPase and permease components
H.sapiens 31-277 -39.600 15  sp|Q03518|TAP1_HUMAN Antigen peptide transporter 1 OS=Homo sapiens GN=TAP1 PE=1 SV=2 (Range: 151-450)
128-432 -46.900 17  sp|Q03518|TAP1_HUMAN Antigen peptide transporter 1 OS=Homo sapiens GN=TAP1 PE=1 SV=2 (Range: 301-600)
210-514 -57.900 23  sp|Q9NP78|ABCB9_HUMAN(removed signalp:1-23) ATP-binding cassette sub-family B member 9 OS=Homo sapiens GN=ABCB9 PE=1 SV=1 (Range: 301-600)
251-555 -64.500 23  sp|Q03519|TAP2_HUMAN(removed signalp:1-28) Antigen peptide transporter 2 OS=Homo sapiens GN=TAP2 PE=1 SV=1 (Range: 301-600)
282-581 -66.400 27  sp|Q03518|TAP1_HUMAN Antigen peptide transporter 1 OS=Homo sapiens GN=TAP1 PE=1 SV=2 (Range: 451-750)
367-632 -77.200 39  sp|Q9NP78|ABCB9_HUMAN(removed signalp:1-23) ATP-binding cassette sub-family B member 9 OS=Homo sapiens GN=ABCB9 PE=1 SV=1 (Range: 451-743)
HGM_OVER 497-613 -3.940 14  PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;
JCSG0516 17-634 -164.000 32  TM0288 TM0288 282164 Purified-2001-02-27
NEW_HUMAN_DOMAINS 532-621 -4.370 12  sp|Q9UJX4|APC5_HUMAN Anaphase-promoting complex subunit 5 OS=Homo sapiens GN=ANAPC5 PE=1 SV=2 (Range: 655-755)
PDB0516 17-634 -164.000 32  3qf4_B mol:protein length:598 Uncharacterized ABC transporter ATP-binding p
PfamA30U 43-321 -31.400 PF13748.4; G8PNQ8_PSEUV/20-254; ABC transporter transmembrane region
413-562 -26.300 29  PF00005.25; YTFR_ECOLI/25-174; ABC transporter
423-606 -11.200 18  PF00625.19; KGUA_ECOLI/4-186; Guanylate kinase
SCOP206 40-381 -61.400 15  d4a82a1 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Human (Homo sapiens) [TaxId: 9606]}
397-634 -80.200 38  d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}
VFDB 1-632 -98.000 23  VFG012509(gi:26247127) (iroC) ATP binding cassette transporter [Salmochelin (IA013)] [Escherichia coli CFT073]
31-633 -105.000 29  VFG013248(gi:16272034) (msbA) lipid transporter ATP-binding/permease [LOS (CVF494)] [Haemophilus influenzae Rd KW20]
20 gi|13507759|ref|NP_109708.1| helicases MPN020 [Mycoplasma pneumoniae M129] 1030 COG0516 1-1030 -168.000 22  [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family
H.sapiens 472-745 -36.200 19  sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2 (Range: 301-600)
513-783 -56.500 29  sp|O14981|BTAF1_HUMAN TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1 PE=1 SV=2 (Range: 1201-1500)
696-990 -64.400 23  sp|Q5FWF4|ZRAB3_HUMAN Zinc finger Ran-binding domain-containing protein 3 OS=Homo sapiens GN=ZRANB3 PE=2 SV=2 (Range: 151-450)
752-1030 -51.500 20  sp|Q9NZC9|SMAL1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Homo sapiens GN=SMARCAL1 PE=1 SV=1 (Range: 601-900)
HGM_OVER 841-1015 -3.920 12  PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152
JCSG0516 380-1030 -65.200 22  WT2414A.SMARCA2 BC075641 422830 Purified-2011-06-03
469-1030 -81.900 28  RF2414A.SMARCA5 BC023144 421183 Cloned-2010-11-18
568-1030 -89.600 32  RF3866A.HELLS BC100394 421236 Purified-2011-02-13
NEW_HUMAN_DOMAINS 11-111 -13.200 18  sp|Q9HCJ5|ZSWM6_HUMAN Zinc finger SWIM domain-containing protein 6 OS=Homo sapiens GN=ZSWIM6 PE=2 SV=2 (Range: 201-338)
PDB0516 282-1023 -10.700 5flm_A mol:protein length:1970 DNA-DIRECTED RNA POLYMERASE
386-1011 -14.600 13  4xqk_A mol:protein length:1578 LlaBIII
455-1030 -39.000 14  4s20_K mol:protein length:974 RNA polymerase-associated protein RapA
555-1030 -86.600 36  1z63_A mol:protein length:500 Helicase of the snf2/rad54 family
PfamA30U 179-571 -25.100 13  PF08455.8; R4KHE0_9FIRM/244-621; Bacterial SNF2 helicase associated
581-854 -43.300 29  PF00176.21; RAD54_SCHPO/267-575; SNF2 family N-terminal domain
797-1030 -18.300 11  PF11496.6; Q6FSK5_CANGA/26-299; Class II histone deacetylase complex subunits 2 and 3
SCOP206 471-749 -11.300 14  d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}
567-796 -63.400 38  d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
798-1030 -53.200 36  d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
VFDB 379-1023 -9.630 10  VFG002548(gi:53720398) (wcbR) capsular polysaccharide biosynthesis fatty acid synthase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]


FFAS is supported by the NIH grant R01-GM087218-01
1 2 0 3 0 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.