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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 689next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|13507740|ref|NP_109689.1| DNA polymerase III beta subunit MPN001 [Mycoplasma pneumoniae M129] 380 PfamA30U 1-120 -43.500 18  PF00712.17; DPO3B_CAUCR/1-121; DNA polymerase III beta subunit, N-terminal domain
135-256 -39.100 12  PF02767.14; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain
258-380 -55.200 23  PF02768.13; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain
2 gi|13507741|ref|NP_109690.1| DnaJ domain-containing protein MPN002 [Mycoplasma pneumoniae M129] 309 PfamA30U 2-61 -33.000 43  PF00226.29; Q22028_CAEEL/17-79; DnaJ domain
120-309 -48.200 12  PF01556.16; T0NBZ6_9EURY/129-343; DnaJ C terminal domain
3 gi|13507742|ref|NP_109691.1| DNA gyrase subunit B MPN003 [Mycoplasma pneumoniae M129] 650 PfamA30U 228-407 -82.300 41  PF00204.23; A9KS52_CLOPH/226-396; DNA gyrase B
548-645 -20.100 20  PF16898.3; K5XBZ3_PHACS/641-767; C-terminal associated domain of TOPRIM
577-639 -46.400 63  PF00986.19; M9X0E0_MANHA/738-800; DNA gyrase B subunit, carboxyl terminus
4 gi|13507743|ref|NP_109692.1| DNA gyrase subunit A MPN004 [Mycoplasma pneumoniae M129] 839 PfamA30U 44-483 -63.900 20  PF00521.18; A0A0D1DXS4_USTMA/785-1232; DNA gyrase/topoisomerase IV, subunit A
620-665 -13.200 28  PF03989.11; GYRA_HAEIN/641-686; DNA gyrase C-terminal domain, beta-propeller
5 gi|13507744|ref|NP_109693.1| seryl-tRNA synthetase MPN005 [Mycoplasma pneumoniae M129] 420 PfamA30U 1-103 -24.300 23  PF02403.20; C5WTV8_SORBI/1-114; Seryl-tRNA synthetase N-terminal domain
6 gi|13507745|ref|NP_109694.1| thymidylate kinase MPN006 [Mycoplasma pneumoniae M129] 210 PfamA30U 9-197 -87.700 34  PF02223.15; KTHY_BACSU/8-199; Thymidylate kinase
7 gi|13507746|ref|NP_109695.1| DNA polymerase III subunit delta' MPN007 [Mycoplasma pneumoniae M129] 253 PfamA30U 1-185 -32.300 10  PF06068.11; RUVB2_CAEEL/17-408; TIP49 C-terminus
2-142 -75.400 27  PF13177.4; A5VIC8_LACRD/13-171; DNA polymerase III, delta subunit
5-251 -12.400 11  PF03215.13; RAD24_YEAST/58-575; Rad17 cell cycle checkpoint protein
8 gi|13507747|ref|NP_109696.1| tRNA modification GTPase TrmE MPN008 [Mycoplasma pneumoniae M129] 442 PfamA30U 6-121 -59.200 41  PF10396.7; A4CKF7_ROBBH/5-124; GTP-binding protein TrmE N-terminus
124-439 -92.000 27  PF12631.5; D5XDU4_THEPJ/127-455; MnmE helical domain
9 gi|13507748|ref|NP_109697.1| hydrolase MPN009 [Mycoplasma pneumoniae M129] 261 PfamA30U 4-260 -95.000 29  PF01026.19; Y454_HAEIN/4-256; TatD related DNase
10 gi|13507749|ref|NP_109698.1| hypothetical protein MPN010 [Mycoplasma pneumoniae M129] 131 PfamA30U 37-130 -28.100 43  PF01519.14; Y137_MYCPN/43-170; Protein of unknown function DUF16 topsan
11 gi|13507750|ref|NP_109699.1|(removed signal:1-26) hypothetical protein MPN011 [Mycoplasma pneumoniae M129] 205 PfamA30U 1-82 -39.100 30  PF00938.15; Y643_MYCPN/29-113; Lipoprotein
12 gi|13507751|ref|NP_109700.1|(removed signal:1-21) hypothetical protein MPN012 [Mycoplasma pneumoniae M129] 214 PfamA30U 1-86 -40.300 26  PF00938.15; Y643_MYCPN/29-113; Lipoprotein
13 gi|13507752|ref|NP_109701.1| hypothetical protein MPN013 [Mycoplasma pneumoniae M129] 257 PfamA30U 6-177 -13.600 PF05934.9; CLCC1_RAT/3-541; Mid-1-related chloride channel (MCLC)
44-132 -24.600 18  PF15708.3; G7PVG9_MACFA/1-223; Proline-rich protein family 20
171-255 -13.400 27  PF01519.14; Y137_MYCPN/43-170; Protein of unknown function DUF16 topsan
14 gi|13507753|ref|NP_109702.1| hypothetical protein MPN014 [Mycoplasma pneumoniae M129] 212 PfamA30U 2-101 -42.600 15  PF08275.9; Q8F416_LEPIN/119-248; DNA primase catalytic core, N-terminal domain
108-195 -44.200 27  PF13155.4; Q8EPY5_OCEIH/263-348; Toprim-like
15 gi|13507754|ref|NP_109703.1| hypothetical protein MPN015 [Mycoplasma pneumoniae M129] 285 PfamA30U 1-273 -33.600 11  PF05770.9; ITPK1_ORYSJ/37-341; Inositol 1, 3, 4-trisphosphate 5/6-kinase
92-271 -64.600 17  PF08443.9; RIMK_HAEIN/105-293; RimK-like ATP-grasp domain
16 gi|13507755|ref|NP_109704.1| ribosomal S6 modification protein MPN016 [Mycoplasma pneumoniae M129] 288 PfamA30U 6-287 -30.500 12  PF05770.9; ITPK1_ORYSJ/37-341; Inositol 1, 3, 4-trisphosphate 5/6-kinase
90-287 -68.500 24  PF08443.9; RIMK_HAEIN/105-293; RimK-like ATP-grasp domain
17 gi|13507756|ref|NP_109705.1| 5,10-methylene-tetrahydrofolate dehydrogenase MPN017 [Mycoplasma pneumoniae M129] 269 PfamA30U 2-111 -57.100 32  PF00763.21; FOLD_BACSK/6-121; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
121-264 -75.500 27  PF02882.17; FOLD1_ARATH/184-349; Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
18 gi|13507757|ref|NP_109706.1|(removed signal:1-25) transport ATP-binding protein MPN018 [Mycoplasma pneumoniae M129] 598 PfamA30U 1-265 -12.700 12  PF13748.4; G8PNQ8_PSEUV/20-254; ABC transporter transmembrane region
55-307 -10.200 15  PF00664.21; ABCC8_CRICR/318-590; ABC transporter transmembrane region
358-517 -28.400 24  PF00005.25; YTFR_ECOLI/25-174; ABC transporter
19 gi|13507758|ref|NP_109707.1| transport ATP-binding protein MPN019 [Mycoplasma pneumoniae M129] 634 PfamA30U 43-321 -31.400 PF13748.4; G8PNQ8_PSEUV/20-254; ABC transporter transmembrane region
413-562 -26.300 29  PF00005.25; YTFR_ECOLI/25-174; ABC transporter
423-606 -11.200 18  PF00625.19; KGUA_ECOLI/4-186; Guanylate kinase
20 gi|13507759|ref|NP_109708.1| helicases MPN020 [Mycoplasma pneumoniae M129] 1030 PfamA30U 179-571 -25.100 13  PF08455.8; R4KHE0_9FIRM/244-621; Bacterial SNF2 helicase associated
581-854 -43.300 29  PF00176.21; RAD54_SCHPO/267-575; SNF2 family N-terminal domain
797-1030 -18.300 11  PF11496.6; Q6FSK5_CANGA/26-299; Class II histone deacetylase complex subunits 2 and 3


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.