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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4372next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15607143|ref|NP_214515.1| chromosomal replication initiation protein (Rv0001) [Mycobacterium tuberculosis H37Rv] 507 PfamA30U 168-386 -103.000 79  PF00308.16; DNAA_STRCO/317-535; Bacterial dnaA protein
413-480 -29.900 51  PF08299.9; D9QS97_ACEAZ/358-426; Bacterial dnaA protein helix-turn-helix
2 gi|15607144|ref|NP_214516.1| DNA polymerase III subunit beta (Rv0002) [Mycobacterium tuberculosis H37Rv] 402 PfamA30U 13-129 -46.200 25  PF00712.17; DPO3B_CAUCR/1-121; DNA polymerase III beta subunit, N-terminal domain
138-260 -41.400 22  PF02767.14; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain
262-399 -40.300 27  PF02768.13; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain
3 gi|15607145|ref|NP_214517.1| recombination protein F (Rv0003) [Mycobacterium tuberculosis H37Rv] 385 PfamA30U 1-353 -21.500 PF13175.4; I1YS32_PREI7/1-378; AAA ATPase domain
4 gi|15607146|ref|NP_214518.1| hypothetical protein (Rv0004) [Mycobacterium tuberculosis H37Rv] 187 PfamA30U 76-162 -38.600 25  PF05258.10; Q02A53_SOLUE/3-88; Protein of unknown function (DUF721 topsan)
5 gi|15607147|ref|NP_214519.1| DNA gyrase subunit B (Rv0005) [Mycobacterium tuberculosis H37Rv] 714 PfamA30U 295-464 -82.400 44  PF00204.23; A9KS52_CLOPH/226-396; DNA gyrase B
605-709 -16.400 16  PF16898.3; K5XBZ3_PHACS/641-767; C-terminal associated domain of TOPRIM
642-703 -42.800 61  PF00986.19; M9X0E0_MANHA/738-800; DNA gyrase B subunit, carboxyl terminus
6 gi|15607148|ref|NP_214520.1| DNA gyrase subunit A (Rv0006) [Mycobacterium tuberculosis H37Rv] 838 PfamA30U 39-484 -63.300 19  PF00521.18; A0A0D1DXS4_USTMA/785-1232; DNA gyrase/topoisomerase IV, subunit A
621-666 -17.100 50  PF03989.11; GYRA_HAEIN/641-686; DNA gyrase C-terminal domain, beta-propeller
7 gi|15607149|ref|NP_214521.1| hypothetical protein (Rv0007) [Mycobacterium tuberculosis H37Rv] 304 PfamA30U 2-287 -9.510 10  PF07267.9; Q2NNY4_NPVHC/1-628; Nucleopolyhedrovirus capsid protein P87
32-302 -12.600 13  PF15576.4; L9KL33_TUPCH/16-260; Domain of unknown function (DUF4661 topsan)
186-302 -51.500 60  PF12089.6; Q0SAF2_RHOJR/351-465; Transmembrane domain of unknown function (DUF3566 topsan)
8 gi|15607150|ref|NP_214522.1| hypothetical protein (Rv0008c) [Mycobacterium tuberculosis H37Rv] 145 PfamA30U 9-145 -89.300 100  PF10814.6; CWSA_MYCTU/9-145; Cell wall synthesis protein CwsA
9 gi|15607151|ref|NP_214523.1| iron-regulated peptidyl-prolyl cis-trans isomerase A (Rv0009) [Mycobacterium tuberculosis H37Rv] 182 PfamA30U 16-169 -60.000 24  PF00160.19; Q7NG65_GLOVI/261-474; Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
10 gi|15607152|ref|NP_214524.1| hypothetical protein (Rv0010c) [Mycobacterium tuberculosis H37Rv] 141 PfamA30U 13-141 -10.400 10  PF15169.4; CQ062_XENTR/2-187; Domain of unknown function (DUF4564 topsan)
58-136 -24.200 18  PF10756.7; Q5YRV9_NOCFA/80-151; Bacterial PH domain
11 gi|15607153|ref|NP_214525.1| putative septation inhibitor protein (Rv0011c) [Mycobacterium tuberculosis H37Rv] 93 PfamA30U 1-93 -60.900 32  PF06781.10; D1BI18_SANKS/1-89; Uncharacterised protein family (UPF0233 topsan)
12 gi|15607154|ref|NP_214526.1| hypothetical protein (Rv0012) [Mycobacterium tuberculosis H37Rv] 262 PfamA30U 102-255 -65.000 26  PF05949.10; F6B3E0_DESCC/87-231; Bacterial protein of unknown function (DUF881 topsan)
13 gi|57116682|ref|YP_177615.1| para-aminobenzoate synthase component II (Rv0013) [Mycobacterium tuberculosis H37Rv] 232 PfamA30U 4-189 -37.700 22  PF00117.26; GUAA_BACSU/10-192; Glutamine amidotransferase class-I
14 gi|15607156|ref|NP_214528.1| transmembrane serine/threonine-protein kinase B PKNB (protein kinase B) (STPK B) (Rv0014c) [Mycobacterium tuberculosis H37Rv] 626 PfamA30U 11-270 -43.400 22  PF00069.23; KS6A1_MOUSE/407-664; Protein kinase domain
495-557 -13.900 23  PF03793.17; A0A098MZT7_LEPIR/112-183; PASTA domain
15 gi|15607157|ref|NP_214529.1| transmembrane serine/threonine-protein kinase A PKNA (protein kinase A) (STPK A) (Rv0015c) [Mycobacterium tuberculosis H37Rv] 431 PfamA30U 13-269 -47.800 23  PF00069.23; KS6A1_MOUSE/407-664; Protein kinase domain
16 gi|15607158|ref|NP_214530.1|(removed signalp:1-30) penicillin-binding protein PbpA (Rv0016c) [Mycobacterium tuberculosis H37Rv] 461 PfamA30U 132-454 -45.000 21  PF00905.20; YQGFA_BACSU/352-682; Penicillin binding protein transpeptidase domain
17 gi|15607159|ref|NP_214531.1|(removed signalp:1-35) cell division protein RodA (Rv0017c) [Mycobacterium tuberculosis H37Rv] 434 PfamA30U 45-410 -63.900 31  PF01098.17; SP5E_BACSU/10-366; Cell cycle protein
18 gi|15607160|ref|NP_214532.1| serine/threonine phosphatase (Rv0018c) [Mycobacterium tuberculosis H37Rv] 514 PfamA30U 33-231 -22.300 14  PF00481.19; B2AA70_PODAN/1451-1701; Protein phosphatase 2C
19 gi|15607161|ref|NP_214533.1| hypothetical protein (Rv0019c) [Mycobacterium tuberculosis H37Rv] 155 PfamA30U 65-155 -49.200 26  PF16697.3; E3FMY4_STIAD/31-122; Inner membrane component of T3SS, cytoplasmic domain
20 gi|15607162|ref|NP_214534.1| hypothetical protein (Rv0020c) [Mycobacterium tuberculosis H37Rv] 527 PfamA30U 1-525 -9.940 PF04388.10; F7E2N6_XENTR/7-705; Hamartin protein
8-122 -41.800 28  PF12401.6; F8JSD1_STREN/4-118; Protein of unknown function (DUF2662 topsan)
12-303 -10.300 PF05934.9; CLCC1_RAT/3-541; Mid-1-related chloride channel (MCLC)
437-525 -31.300 23  PF16697.3; E3FMY4_STIAD/31-122; Inner membrane component of T3SS, cytoplasmic domain


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.