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anford Burnham Prebys Medical Discovery Institute
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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15675949|ref|NP_273067.1| putative acetyltransferase (NMB0001) [Neisseria meningitidis MC58] 163 COG0516 6-145 -26.300 21  [R] COG3153 Predicted acetyltransferase
H.sapiens 1-162 -51.500 16  sp|Q93015|NAT6_HUMAN N-acetyltransferase 6 OS=Homo sapiens GN=NAT6 PE=2 SV=2
HGM_OVER 90-137 -3.160 23  PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
JCSG0516 1-162 -50.400 16  MA16098A NP_036323.2 400355 Cloned-2009-02-26
NEW_HUMAN_DOMAINS 79-141 -5.440 18  sp|O00237|RN103_HUMAN E3 ubiquitin-protein ligase RNF103 OS=Homo sapiens GN=RNF103 PE=1 SV=1 (Range: 106-183)
PDB0516 8-162 -34.200 19  2a4n_A mol:protein length:182 aac(6`)-Ii
PfamA30U 28-162 -29.500 14  PF17013.3; R0MKA5_NOSB1/22-236; Putative acetyl-transferase
SCOP206 8-162 -34.100 19  d1n71a_ d.108.1.1 (A:) Aminoglycoside 6`-N-acetyltransferase {Enterococcus faecium [TaxId: 1352]}
VFDB 1-160 -57.200 16  VFG045571(gi:52842629) (lpg2420) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
2 gi|15675950|ref|NP_273068.1|(removed signalp:1-36) hypothetical protein (NMB0002) [Neisseria meningitidis MC58] 95 COG0516 5-84 -10.900 [S] KOG4657 Uncharacterized conserved protein
H.sapiens 2-95 -38.700 18  sp|Q8TD57|DYH3_HUMAN Dynein heavy chain 3, axonemal OS=Homo sapiens GN=DNAH3 PE=2 SV=1 (Range: 2851-3150)
HGM_OVER 28-84 -8.220 17  PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]
JCSG0516 2-95 -37.600 97  SP17614A YP_976050.1 412346 Purified-2010-09-29
NEW_HUMAN_DOMAINS 26-70 -8.140 15  sp|Q5T1B0|AXDN1_HUMAN Axonemal dynein light chain domain-containing protein 1 OS=Homo sapiens GN=AXDND1 PE=1 SV=1 (Range: 884-967)
PDB0516 4-90 -24.300 15  3wuq_A mol:protein length:283 Cytoplasmic dynein 1 heavy chain 1
PfamA30U 2-95 -33.900 17  PF12777.5; W4YN93_STRPU/627-970; Microtubule-binding stalk of dynein motor
SCOP206 11-95 -6.950 15  d1jnra1 a.7.3.1 (A:503-643) Adenylylsulfate reductase A subunit {Archaeoglobus fulgidus [TaxId: 2234]}
VFDB 2-82 -9.790 14  VFG000546(gi:16766191) (sipB/sspB) type III secretion system hydrophilic translocator, pore protein SipB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
3 gi|15675951|ref|NP_273069.1| glutamyl-tRNA synthetase (NMB0003) [Neisseria meningitidis MC58] 464 COG0516 1-464 -110.000 31  [J] KOG1149 Glutamyl-tRNA synthetase (mitochondrial)
H.sapiens 1-464 -113.000 29  sp|Q5JPH6|SYEM_HUMAN Probable glutamyl-tRNA synthetase, mitochondrial OS=Homo sapiens GN=EARS2 PE=1 SV=2
HGM_OVER 42-191 -2.050 13  PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;
JCSG0516 3-464 -132.000 38  TM1351 TM1351 283212 PDB-2006-12-06
NEW_HUMAN_DOMAINS 184-307 -5.650 11  sp|Q9Y2M0|FAN1_HUMAN Fanconi-associated nuclease 1 OS=Homo sapiens GN=FAN1 PE=1 SV=4 (Range: 373-487)
PDB0516 2-464 -142.000 51  4g6z_A mol:protein length:490 Glutamate-tRNA ligase
PfamA30U 2-321 -41.300 16  PF01921.16; Q5NP46_ZYMMO/15-368; tRNA synthetases class I (K)
SCOP206 2-304 -129.000 60  d4g6za1 c.26.1.0 (A:3-304) automated matches {Burkholderia thailandensis [TaxId: 271848]}
305-464 -54.600 36  d4g6za2 a.97.1.0 (A:305-466) automated matches {Burkholderia thailandensis [TaxId: 271848]}
VFDB 15-455 -5.210 VFG000703(gi:30962651) (bsc4) polysaccharide biosynthesis protein Bsc4 [Capsule (VF0043)] [Haemophilus influenzae str. 1007]
4 gi|15675952|ref|NP_273070.1|(removed signalp:1-37) EpiH/GdmH-related protein (NMB0004) [Neisseria meningitidis MC58] 177 COG0516 5-177 -44.600 20  [S] COG2949 Uncharacterized membrane protein
H.sapiens 18-170 -8.930 15  sp|Q7Z444|RASE_HUMAN GTPase ERas OS=Homo sapiens GN=ERAS PE=2 SV=1
HGM_OVER 21-158 -2.520 13  HGC00933 gi|162753228|dbj|BAAZ01012194.1|2.0 TMP01261;
JCSG0516 5-177 -43.900 21  GS13662A YP_001336233.1 384095 Purified-2010-04-01
NEW_HUMAN_DOMAINS 10-131 -5.830 tr|E7EWK8|E7EWK8_HUMAN Uncharacterized protein OS=Homo sapiens GN=PLOD1 PE=4 SV=2 (Range: 19-216)
PDB0516 11-132 -24.500 18  3ca8_A mol:protein length:266 Protein ydcF
PfamA30U 16-141 -37.900 30  PF02698.15; D5CMM5_SIDLE/81-243; DUF218 topsan domain
SCOP206 36-164 -7.850 12  d4fhaa_ c.1.10.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 406556]}
VFDB 9-170 -36.300 15  VFG045590(gi:52842834) (lpg2628) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
5 gi|15675953|ref|NP_273071.1| arsenate reductase (NMB0005) [Neisseria meningitidis MC58] 117 COG0516 4-117 -29.700 24  [P] COG1393 Arsenate reductase and related proteins, glutaredoxin family
H.sapiens 9-94 -7.680 12  sp|P59045|NAL11_HUMAN NACHT, LRR and PYD domains-containing protein 11 OS=Homo sapiens GN=NLRP11 PE=2 SV=2 (Range: 451-750)
HGM_OVER 2-96 -5.680 13  PB008434 gi|121582878|ref|YP_973320.1| hypothetical protein Pnap_4296 [Polaromonas naphthalenivorans CJ2]gi|120596140|gb|ABM39578.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]
JCSG0516 1-56 -9.610 19  TM1031 TM1031 282898 Purified-2001-11-06
NEW_HUMAN_DOMAINS 12-54 -6.570 11  tr|B4DDW1|B4DDW1_HUMAN Uncharacterized protein OS=Homo sapiens GN=METTL7A PE=2 SV=1 (Range: 125-175)
PDB0516 1-117 -77.600 52  3rdw_A mol:protein length:121 Putative arsenate reductase
PfamA30U 1-107 -41.400 20  PF07955.9; S0E7W5_GIBF5/2-126; Protein of unknown function (DUF1687 topsan)
SCOP206 3-117 -70.100 32  d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}
VFDB 1-117 -4.650 17  VFG001859(gi:52842863) (feoB) ferrous iron transporter B [FeoAB (VF0160)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
6 gi|15675954|ref|NP_273072.1|(removed signalp:1-22) thioredoxin-related protein (NMB0006) [Neisseria meningitidis MC58] 138 COG0516 1-135 -35.200 11  [R] COG3054 Predicted transcriptional regulator
H.sapiens 1-135 -40.800 sp|P49895|IOD1_HUMAN(removed signalp:1-26) Type I iodothyronine deiodinase OS=Homo sapiens GN=DIO1 PE=2 SV=3
HGM_OVER 19-128 -4.900 11  PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;
JCSG0516 1-136 -66.100 21  SP14202AG YP_094066.1 412119 Diffraction|HSQC-2013-07-22
NEW_HUMAN_DOMAINS 9-34 -6.200 11  sp|A6NFU0|F187A_HUMAN Ig-like V-type domain-containing protein FAM187A OS=Homo sapiens GN=FAM187A PE=3 SV=1 (Range: 142-237)
PDB0516 1-138 -77.700 100  3raz_A mol:protein length:151 Thioredoxin-related protein
PfamA30U 1-116 -55.500 19  PF00578.19; B8CZ50_HALOH/40-156; AhpC/TSA family
SCOP206 1-135 -68.200 28  d3or5a_ c.47.1.0 (A:) automated matches {Chlorobaculum tepidum [TaxId: 1097]}
VFDB 1-101 -29.900 12  VFG007176(gi:28898472) (exsD) transcriptional regulator ExsD [T3SS1 (VF0408)] [Vibrio parahaemolyticus RIMD 2210633]
7 gi|15675955|ref|NP_273073.1| ABC transporter ATP-binding protein (NMB0007) [Neisseria meningitidis MC58] 216 COG0516 1-216 -107.000 41  [D] COG2884 Predicted ATPase involved in cell division
H.sapiens 2-215 -50.800 22  sp|Q99758|ABCA3_HUMAN ATP-binding cassette sub-family A member 3 OS=Homo sapiens GN=ABCA3 PE=1 SV=2 (Range: 1351-1650)
HGM_OVER 14-162 -5.230 10  HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;
JCSG0516 1-216 -107.000 43  CC20728A NP_421019.1 423140 Cloned-2011-06-10
NEW_HUMAN_DOMAINS 22-55 -6.350 14  sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3 (Range: 217-335)
PDB0516 1-216 -81.600 36  2pcj_A mol:protein length:224 Lipoprotein-releasing system ATP-binding prot
PfamA30U 18-166 -40.400 28  PF00005.25; YTFR_ECOLI/25-174; ABC transporter
23-216 -14.700 PF10443.7; C8VEZ9_EMENI/373-791; RNA12 protein
SCOP206 1-216 -81.700 36  d2pcja_ c.37.1.0 (A:) automated matches {Aquifex aeolicus [TaxId: 224324]}
VFDB 1-216 -70.800 32  VFG002059(gi:15595271) (tagT) type six secretion associated protein TagT, ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
8 gi|15675956|ref|NP_273074.1| putative cell division protein FtsX (NMB0008) [Neisseria meningitidis MC58] 305 COG0516 1-304 -101.000 26  [D] COG2177 Cell division protein
H.sapiens 70-223 -7.090 13  sp|Q9NPY3|C1QR1_HUMAN(removed signalp:1-23) Complement component C1q receptor OS=Homo sapiens GN=CD93 PE=1 SV=3 (Range: 451-629)
HGM_OVER 50-158 -5.460 PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;
JCSG0516 17-303 -20.600 10  TM0706 TM0706 282576 Purified-2004-02-02
NEW_HUMAN_DOMAINS 8-124 -5.350 sp|A6NE01|F186A_HUMAN Protein FAM186A OS=Homo sapiens GN=FAM186A PE=2 SV=3 (Range: 2098-2246)
PDB0516 51-161 -28.900 12  4n8n_A mol:protein length:115 Cell division protein FtsX
PfamA30U 179-298 -60.700 31  PF02687.19; A8AR20_CITK8/231-351; FtsX-like permease family
SCOP206 66-206 -5.830 d1n1fa_ a.26.1.3 (A:) Interleukin-19 {Human (Homo sapiens) [TaxId: 9606]}
VFDB 17-305 -16.600 11  VFG002058(gi:15595270) (tagS) type IV secretion associated protein TagS, forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
9 gi|15675957|ref|NP_273075.1| BolA/YrbA family protein (NMB0009) [Neisseria meningitidis MC58] 82 COG0516 1-82 -55.200 27  [K] COG5007 Predicted transcriptional regulator, BolA superfamily
H.sapiens 2-82 -42.500 34  sp|Q9H3K6|BOLA2_HUMAN BolA-like protein 2 OS=Homo sapiens GN=BOLA2 PE=1 SV=1
HGM_OVER 25-75 -3.020 16  HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000;
JCSG0516 10-60 -5.040 TM0928 TM0928 282797 Crystal|NMR-2001-05-15
NEW_HUMAN_DOMAINS 7-80 -5.710 13  sp|O75717|WDHD1_HUMAN WD repeat and HMG-box DNA-binding protein 1 OS=Homo sapiens GN=WDHD1 PE=1 SV=1 (Range: 441-531)
PDB0516 1-82 -55.000 27  1ny8_A mol:protein length:97 Protein yrbA
PfamA30U 11-76 -32.700 39  PF01722.16; G4T8V3_PIRID/11-92; BolA-like protein
SCOP206 1-82 -55.200 27  d1ny8a1 d.52.6.1 (A:1-89) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]}
VFDB 21-66 -4.740 23  VFG045535(gi:52841911) (ravZ) Dot/Icm type IV secretion system effector RavZ [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
10 gi|15675958|ref|NP_273076.1| phosphoglycerate kinase (NMB0010) [Neisseria meningitidis MC58] 403 COG0516 1-403 -118.000 59  [G] COG0126 3-phosphoglycerate kinase
H.sapiens 1-400 -103.000 41  sp|P07205|PGK2_HUMAN Phosphoglycerate kinase 2 OS=Homo sapiens GN=PGK2 PE=1 SV=3
HGM_OVER 105-397 -3.540 12  PB019827 gi|67919427|ref|ZP_00513005.1| conserved hypothetical protein [Chlorobium limicola DSM 245]gi|67782966|gb|EAM42367.1| conserved hypothetical protein [Chlorobium limicola DSM 245]
JCSG0516 1-401 -94.200 45  TM0689 TM0689 282559 Purified-2001-02-22
NEW_HUMAN_DOMAINS 343-400 -5.810 19  sp|Q9UL15|BAG5_HUMAN BAG family molecular chaperone regulator 5 OS=Homo sapiens GN=BAG5 PE=1 SV=1 (Range: 96-167)
PDB0516 1-403 -118.000 59  1zmr_A mol:protein length:387 Phosphoglycerate kinase
PfamA30U 10-390 -108.000 45  PF00162.17; K9V4L4_9CYAN/12-388; Phosphoglycerate kinase
SCOP206 2-403 -118.000 59  d1zmra_ c.86.1.1 (A:) Phosphoglycerate kinase {Escherichia coli [TaxId: 562]}
VFDB 2-241 -4.460 13  VFG000073(gi:16802247) (plcA) phosphatidylinositol-specific phospholipase c [PlcA (VF0063)] [Listeria monocytogenes EGD-e]
11 gi|15675959|ref|NP_273077.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (NMB0011) [Neisseria meningitidis MC58] 417 COG0516 1-417 -123.000 58  [M] COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase
H.sapiens 172-413 -5.350 14  sp|O60237|MYPT2_HUMAN Protein phosphatase 1 regulatory subunit 12B OS=Homo sapiens GN=PPP1R12B PE=1 SV=2 (Range: 151-450)
HGM_OVER 89-228 -3.810 PB071107 _Gut.Meta.Jp.0066071_ gi|162701604|dbj|BAAY01026246.1||2 (+ 344:749~0 complete)
JCSG0516 1-416 -121.000 46  TM0108 TM0108 281989 Purified-2001-04-24
NEW_HUMAN_DOMAINS 315-416 -4.140 13  sp|Q96EV8|DTBP1_HUMAN Dysbindin OS=Homo sapiens GN=DTNBP1 PE=1 SV=1 (Range: 44-146)
PDB0516 1-417 -125.000 58  2rl1_A mol:protein length:424 UDP-N-acetylglucosamine 1-carboxyvinyltransfe
PfamA30U 6-405 -118.000 59  PF00275.18; MURA_ECOLI/6-406; EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
SCOP206 1-417 -123.000 60  d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]}
VFDB 321-413 -4.490 14  VFG043372(gi:15645019) (cheW) chemotaxis coupling protein CheW [Pse5Ac7Ac (AI150)] [Helicobacter pylori 26695]
12 gi|15675960|ref|NP_273078.1| hypothetical protein (NMB0012) [Neisseria meningitidis MC58] 323 COG0516 33-323 -66.400 19  [S] COG2899 Uncharacterized protein conserved in bacteria
H.sapiens 81-288 -10.400 15  sp|Q9HC07|TM165_HUMAN(removed signalp:1-33) Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1
HGM_OVER 163-257 -4.640 14  HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;
JCSG0516 152-304 -6.490 SC.B20993D YP_441931.1 428743 Selected-2013-01-04
NEW_HUMAN_DOMAINS 138-258 -6.610 15  sp|O95071|UBR5_HUMAN E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens GN=UBR5 PE=1 SV=2 (Range: 1373-1523)
PDB0516 4-254 -7.160 11  3ug9_A mol:protein length:333 Archaeal-type opsin 1, Archaeal-type opsin 2
PfamA30U 84-321 -21.700 19  PF04332.13; Q9RSA1_DEIRA/56-346; Protein of unknown function (DUF475 topsan)
85-286 -103.000 51  PF03741.14; Q8EG61_SHEON/77-283; Integral membrane protein TerC family
SCOP206 36-278 -6.580 12  d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}
VFDB 84-288 -4.620 13  VFG001235(gi:15595614) (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
13 gi|15675961|ref|NP_273079.1| hypothetical protein (NMB0013) [Neisseria meningitidis MC58] 149 COG0516 2-147 -62.700 27  [S] COG3399 Uncharacterized protein conserved in bacteria
H.sapiens 1-149 -14.500 12  sp|Q96Q45|AL2S4_HUMAN Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 4 protein OS=Homo sapiens GN=ALS2CR4 PE=1 SV=1
HGM_OVER 3-64 -5.430 12  HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;
JCSG0516 2-55 -11.500 13  SP2485D NP_371294.1 413704 Crystal|NMR-2012-02-26
NEW_HUMAN_DOMAINS 60-149 -5.750 tr|B7Z676|B7Z676_HUMAN Uncharacterized protein OS=Homo sapiens GN=SLC9B2 PE=2 SV=1 (Range: 71-175)
PDB0516 2-149 -7.320 12  3v2w_A mol:protein length:520 Sphingosine 1-phosphate receptor 1, Lysozyme
PfamA30U 1-143 -18.700 PF03653.11; Q9A210_CAUCR/4-152; Uncharacterised protein family (UPF0093 topsan)
47-146 -26.600 18  PF05425.11; Q1QFL4_NITHX/201-307; Copper resistance protein D
SCOP206 5-142 -6.620 11  d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
VFDB 12-148 -7.360 13  VFG000019(gi:33594646) (ptlD) Ptl Type IV secretion system VirB6 homolog protein PtlA [Ptx (VF0026)] [Bordetella pertussis Tohama I]
14 gi|15675962|ref|NP_273080.1| 3-deoxy-D-manno-octulosonic-acid transferase (NMB0014) [Neisseria meningitidis MC58] 423 COG0516 1-420 -109.000 33  [M] COG1519 3-deoxy-D-manno-octulosonic-acid transferase
H.sapiens 59-421 -10.800 11  sp|P37287|PIGA_HUMAN Phosphatidylinositol N-acetylglucosaminyltransferase subunit A OS=Homo sapiens GN=PIGA PE=1 SV=1
140-421 -12.900 10  sp|Q96MS3|GL1D1_HUMAN(removed signalp:1-16) Glycosyltransferase 1 domain-containing protein 1 OS=Homo sapiens GN=GLT1D1 PE=2 SV=2
HGM_OVER 127-217 -2.970 HGC00803 gi|163280588|dbj|BABD01030100.1|2.0 TMP01051;
JCSG0516 59-419 -13.500 14  MI10449AE YP_755104.1 397713 Purified-2009-09-08
NEW_HUMAN_DOMAINS 86-189 -5.400 15  sp|A9Z1Z3|FR1L4_HUMAN Fer-1-like protein 4 OS=Homo sapiens GN=FER1L4 PE=2 SV=1 (Range: 498-587)
PDB0516 21-413 -92.300 23  2xci_A mol:protein length:374 3-DEOXY-D-MANNO-2-OCTULOSONIC ACID TRANSFERAS
PfamA30U 33-208 -78.100 40  PF04413.14; B3PCK7_CELJU/37-215; 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
51-418 -11.500 13  PF04007.10; O26874_METTH/16-355; Protein of unknown function (DUF354 topsan)
219-398 -12.600 18  PF00534.18; BSHA_BACSU/185-352; Glycosyl transferases group 1
SCOP206 59-415 -12.500 12  d2iw1a_ c.87.1.8 (A:) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
VFDB 1-420 -111.000 37  VFG000141(gi:15600181) (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
15 gi|15675963|ref|NP_273081.1| 6-phosphogluconate dehydrogenase (NMB0015) [Neisseria meningitidis MC58] 482 COG0516 1-482 -140.000 82  [G] COG0362 6-phosphogluconate dehydrogenase
H.sapiens 2-482 -138.000 62  sp|P52209|6PGD_HUMAN 6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3
HGM_OVER 231-406 -3.250 13  HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;
JCSG0516 1-473 -129.000 47  TM0438 TM0438 282311 Purified-2001-12-06
NEW_HUMAN_DOMAINS 120-262 -5.950 21  sp|Q9BPY3|F118B_HUMAN Protein FAM118B OS=Homo sapiens GN=FAM118B PE=1 SV=1 (Range: 1-158)
PDB0516 2-482 -138.000 62  1pgn_A mol:protein length:482 6-PHOSPHOGLUCONATE DEHYDROGENASE
PfamA30U 4-174 -71.500 51  PF03446.13; Q8FTI1_COREF/15-184; NAD binding domain of 6-phosphogluconate dehydrogenase
179-468 -103.000 51  PF00393.17; K8GH81_9CYAN/178-467; 6-phosphogluconate dehydrogenase, C-terminal domain
SCOP206 2-176 -81.200 66  d4gwga1 c.2.1.0 (A:1-176) automated matches {Human (Homo sapiens) [TaxId: 9606]}
177-469 -105.000 61  d4gwga2 a.100.1.1 (A:177-469) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 168-467 -4.870 10  VFG002088(gi:15600891) (icmF/vasK) type VI secretion system inner membrane protein VasK [T6SS (VF0335)] [Vibrio cholerae O1 biovar El Tor str. N16961]
16 gi|15675964|ref|NP_273082.1| hypothetical protein (NMB0016) [Neisseria meningitidis MC58] 78 COG0516 21-74 -7.970 25  [J] KOG3419 Mitochondrial/chloroplast ribosomal protein S16
H.sapiens 2-73 -7.340 20  sp|P13798|ACPH_HUMAN Acylamino-acid-releasing enzyme OS=Homo sapiens GN=APEH PE=1 SV=4 (Range: 151-450)
HGM_OVER 4-58 -3.230 12  PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;
JCSG0516 1-76 -6.440 27  CH1624A O00462 400587 Selected-2009-01-06
NEW_HUMAN_DOMAINS 11-64 -6.650 25  sp|Q99549|MPP8_HUMAN M-phase phosphoprotein 8 OS=Homo sapiens GN=MPHOSPH8 PE=1 SV=2 (Range: 738-860)
PDB0516 13-73 -7.030 13  3ir4_A mol:protein length:218 Glutaredoxin 2
PfamA30U 7-48 -6.410 23  PF04020.11; R4PXK2_9BACT/2-110; Mycobacterial 4 TMS phage holin, superfamily IV
SCOP206 11-67 -6.350 24  d2qvja_ a.260.1.1 (A:) Nucleoprotein {Vesicular stomatitis indiana virus [TaxId: 11277]}
VFDB 1-71 -4.700 16  VFG000289(gi:15645155) (virB6/cagW) type IV secretion system protein Cag9/CagW, VirB6 homolog [Type IV secretion system (VF0060)] [Helicobacter pylori 26695]
17 gi|15675965|ref|NP_273083.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (NMB0017) [Neisseria meningitidis MC58] 307 COG0516 1-306 -117.000 51  [M] COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase
H.sapiens 180-227 -6.040 16  sp|Q9H347|UBQL3_HUMAN Ubiquilin-3 OS=Homo sapiens GN=UBQLN3 PE=1 SV=2 (Range: 451-655)
HGM_OVER 2-243 -3.330 10  PB014120 _Gut.Meta.Jp.0147711_ gi|163636126|dbj|BABG01000147.1||5 (+ 2345:3428~0 complete)
JCSG0516 1-220 -5.730 14  FL10895A YP_563020.1 376176 Purified-2007-06-05
NEW_HUMAN_DOMAINS 185-249 -5.400 29  sp|Q15413|RYR3_HUMAN Ryanodine receptor 3 OS=Homo sapiens GN=RYR3 PE=1 SV=3 (Range: 4505-4577)
PDB0516 1-306 -119.000 48  4mdt_A mol:protein length:305 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosam
PfamA30U 3-278 -115.000 57  PF03331.11; D5CP16_SIDLE/4-276; UDP-3-O-acyl N-acetylglycosamine deacetylase
SCOP206 2-134 -61.400 32  d3p3ca1 d.14.1.7 (A:2-127) automated matches {Aquifex aeolicus [TaxId: 63363]}
135-286 -73.500 34  d3p3ca2 d.14.1.7 (A:128-273) automated matches {Aquifex aeolicus [TaxId: 63363]}
VFDB 1-306 -120.000 49  VFG013412(gi:16273070) (lpxC) UDP-3-O-(R-3-hydroxymyristoyl)-N-acetylglucosamine deacetylase [LOS (CVF494)] [Haemophilus influenzae Rd KW20]
18 gi|15675966|ref|NP_273084.1|(removed signalp:1-27) pilin PilE (NMB0018) [Neisseria meningitidis MC58] 143 COG0516 1-142 -69.500 85  [NU] COG4969 Tfp pilus assembly protein, major pilin PilA
H.sapiens 1-53 -8.190 20  sp|P52179|MYOM1_HUMAN Myomesin-1 OS=Homo sapiens GN=MYOM1 PE=1 SV=2 (Range: 1-300)
HGM_OVER 2-83 -6.680 PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
JCSG0516 1-143 -18.000 11  PI20585C ZP_02421340.1 420821 Purified-2010-11-17
NEW_HUMAN_DOMAINS 1-30 -8.370 23  sp|Q8WW14|CJ082_HUMAN Uncharacterized protein C10orf82 OS=Homo sapiens GN=C10orf82 PE=2 SV=2 (Range: 69-138)
PDB0516 3-143 -88.900 98  4v1j_A mol:protein length:142 FIMBRIAL PROTEIN
PfamA30U 9-136 -31.800 16  PF00114.17; Q60163_MORBO/35-157; Pilin (bacterial filament)
SCOP206 1-142 -68.800 82  d1ay2a_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
VFDB 1-143 -71.100 100  VFG000221(gi:15675966) (pilE) Type IV pilus major pilin subunit PilE [Type IV pili (VF0075)] [Neisseria meningitidis MC58]
19 gi|77358699|ref|YP_338284.1| pilS cassette (NMB0019) [Neisseria meningitidis MC58] 136 COG0516 1-123 -49.200 77  [NU] COG4969 Tfp pilus assembly protein, major pilin PilA
H.sapiens 1-127 -8.620 11  sp|Q86X10|RLGPB_HUMAN Ral GTPase-activating protein subunit beta OS=Homo sapiens GN=RALGAPB PE=1 SV=1 (Range: 751-1050)
HGM_OVER 1-81 -4.420 PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;
JCSG0516 1-63 -8.490 14  SP19385A YP_002937421.1 411151 Purified-2010-09-29
NEW_HUMAN_DOMAINS 3-82 -7.910 13  sp|Q86X10|RLGPB_HUMAN Ral GTPase-activating protein subunit beta OS=Homo sapiens GN=RALGAPB PE=1 SV=1 (Range: 896-990)
PDB0516 1-123 -69.200 78  4xnp_A mol:protein length:137 Major pilin PilE
PfamA30U 2-116 -25.800 19  PF00114.17; Q60163_MORBO/35-157; Pilin (bacterial filament)
SCOP206 1-122 -50.800 30  d1qvea1 d.24.1.1 (A:29-150) Pilin P1 {Pseudomonas aeruginosa [TaxId: 287]}
VFDB 1-122 -50.100 82  VFG000221(gi:15675966) (pilE) Type IV pilus major pilin subunit PilE [Type IV pili (VF0075)] [Neisseria meningitidis MC58]
20 gi|77358700|ref|YP_338285.1| pilS cassette (NMB0020) [Neisseria meningitidis MC58] 124 COG0516 1-122 -47.900 78  [NU] COG4969 Tfp pilus assembly protein, major pilin PilA
H.sapiens 1-124 -8.000 12  sp|Q86X10|RLGPB_HUMAN Ral GTPase-activating protein subunit beta OS=Homo sapiens GN=RALGAPB PE=1 SV=1 (Range: 751-1050)
HGM_OVER 1-81 -4.270 PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;
JCSG0516 1-63 -8.880 10  SP19385A YP_002937421.1 411151 Purified-2010-09-29
NEW_HUMAN_DOMAINS 3-82 -7.740 13  sp|Q86X10|RLGPB_HUMAN Ral GTPase-activating protein subunit beta OS=Homo sapiens GN=RALGAPB PE=1 SV=1 (Range: 896-990)
PDB0516 1-123 -70.900 68  4xnp_A mol:protein length:137 Major pilin PilE
PfamA30U 2-116 -26.100 16  PF00114.17; Q60163_MORBO/35-157; Pilin (bacterial filament)
SCOP206 1-123 -52.600 31  d1qvea1 d.24.1.1 (A:29-150) Pilin P1 {Pseudomonas aeruginosa [TaxId: 287]}
VFDB 1-123 -49.300 75  VFG000221(gi:15675966) (pilE) Type IV pilus major pilin subunit PilE [Type IV pili (VF0075)] [Neisseria meningitidis MC58]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.