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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 2171next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15675949|ref|NP_273067.1| putative acetyltransferase (NMB0001) [Neisseria meningitidis MC58] 163 COG0516 6-145 -26.300 21  [R] COG3153 Predicted acetyltransferase
2 gi|15675950|ref|NP_273068.1|(removed signalp:1-36) hypothetical protein (NMB0002) [Neisseria meningitidis MC58] 95 COG0516 5-84 -10.900 [S] KOG4657 Uncharacterized conserved protein
3 gi|15675951|ref|NP_273069.1| glutamyl-tRNA synthetase (NMB0003) [Neisseria meningitidis MC58] 464 COG0516 1-464 -110.000 31  [J] KOG1149 Glutamyl-tRNA synthetase (mitochondrial)
4 gi|15675952|ref|NP_273070.1|(removed signalp:1-37) EpiH/GdmH-related protein (NMB0004) [Neisseria meningitidis MC58] 177 COG0516 5-177 -44.600 20  [S] COG2949 Uncharacterized membrane protein
5 gi|15675953|ref|NP_273071.1| arsenate reductase (NMB0005) [Neisseria meningitidis MC58] 117 COG0516 4-117 -29.700 24  [P] COG1393 Arsenate reductase and related proteins, glutaredoxin family
6 gi|15675954|ref|NP_273072.1|(removed signalp:1-22) thioredoxin-related protein (NMB0006) [Neisseria meningitidis MC58] 138 COG0516 1-135 -35.200 11  [R] COG3054 Predicted transcriptional regulator
7 gi|15675955|ref|NP_273073.1| ABC transporter ATP-binding protein (NMB0007) [Neisseria meningitidis MC58] 216 COG0516 1-216 -107.000 41  [D] COG2884 Predicted ATPase involved in cell division
8 gi|15675956|ref|NP_273074.1| putative cell division protein FtsX (NMB0008) [Neisseria meningitidis MC58] 305 COG0516 1-304 -101.000 26  [D] COG2177 Cell division protein
9 gi|15675957|ref|NP_273075.1| BolA/YrbA family protein (NMB0009) [Neisseria meningitidis MC58] 82 COG0516 1-82 -55.200 27  [K] COG5007 Predicted transcriptional regulator, BolA superfamily
10 gi|15675958|ref|NP_273076.1| phosphoglycerate kinase (NMB0010) [Neisseria meningitidis MC58] 403 COG0516 1-403 -118.000 59  [G] COG0126 3-phosphoglycerate kinase
11 gi|15675959|ref|NP_273077.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (NMB0011) [Neisseria meningitidis MC58] 417 COG0516 1-417 -123.000 58  [M] COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase
12 gi|15675960|ref|NP_273078.1| hypothetical protein (NMB0012) [Neisseria meningitidis MC58] 323 COG0516 33-323 -66.400 19  [S] COG2899 Uncharacterized protein conserved in bacteria
13 gi|15675961|ref|NP_273079.1| hypothetical protein (NMB0013) [Neisseria meningitidis MC58] 149 COG0516 2-147 -62.700 27  [S] COG3399 Uncharacterized protein conserved in bacteria
14 gi|15675962|ref|NP_273080.1| 3-deoxy-D-manno-octulosonic-acid transferase (NMB0014) [Neisseria meningitidis MC58] 423 COG0516 1-420 -109.000 33  [M] COG1519 3-deoxy-D-manno-octulosonic-acid transferase
15 gi|15675963|ref|NP_273081.1| 6-phosphogluconate dehydrogenase (NMB0015) [Neisseria meningitidis MC58] 482 COG0516 1-482 -140.000 82  [G] COG0362 6-phosphogluconate dehydrogenase
16 gi|15675964|ref|NP_273082.1| hypothetical protein (NMB0016) [Neisseria meningitidis MC58] 78 COG0516 21-74 -7.970 25  [J] KOG3419 Mitochondrial/chloroplast ribosomal protein S16
17 gi|15675965|ref|NP_273083.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (NMB0017) [Neisseria meningitidis MC58] 307 COG0516 1-306 -117.000 51  [M] COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase
18 gi|15675966|ref|NP_273084.1|(removed signalp:1-27) pilin PilE (NMB0018) [Neisseria meningitidis MC58] 143 COG0516 1-142 -69.500 85  [NU] COG4969 Tfp pilus assembly protein, major pilin PilA
19 gi|77358699|ref|YP_338284.1| pilS cassette (NMB0019) [Neisseria meningitidis MC58] 136 COG0516 1-123 -49.200 77  [NU] COG4969 Tfp pilus assembly protein, major pilin PilA
20 gi|77358700|ref|YP_338285.1| pilS cassette (NMB0020) [Neisseria meningitidis MC58] 124 COG0516 1-122 -47.900 78  [NU] COG4969 Tfp pilus assembly protein, major pilin PilA

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.