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anford Burnham Prebys Medical Discovery Institute
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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 2171next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15675949|ref|NP_273067.1| putative acetyltransferase (NMB0001) [Neisseria meningitidis MC58] 163 SCOP206 8-162 -34.100 19  d1n71a_ d.108.1.1 (A:) Aminoglycoside 6`-N-acetyltransferase {Enterococcus faecium [TaxId: 1352]}
2 gi|15675950|ref|NP_273068.1|(removed signalp:1-36) hypothetical protein (NMB0002) [Neisseria meningitidis MC58] 95 SCOP206 11-95 -6.950 15  d1jnra1 a.7.3.1 (A:503-643) Adenylylsulfate reductase A subunit {Archaeoglobus fulgidus [TaxId: 2234]}
3 gi|15675951|ref|NP_273069.1| glutamyl-tRNA synthetase (NMB0003) [Neisseria meningitidis MC58] 464 SCOP206 2-304 -129.000 60  d4g6za1 c.26.1.0 (A:3-304) automated matches {Burkholderia thailandensis [TaxId: 271848]}
305-464 -54.600 36  d4g6za2 a.97.1.0 (A:305-466) automated matches {Burkholderia thailandensis [TaxId: 271848]}
4 gi|15675952|ref|NP_273070.1|(removed signalp:1-37) EpiH/GdmH-related protein (NMB0004) [Neisseria meningitidis MC58] 177 SCOP206 36-164 -7.850 12  d4fhaa_ c.1.10.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 406556]}
5 gi|15675953|ref|NP_273071.1| arsenate reductase (NMB0005) [Neisseria meningitidis MC58] 117 SCOP206 3-117 -70.100 32  d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}
6 gi|15675954|ref|NP_273072.1|(removed signalp:1-22) thioredoxin-related protein (NMB0006) [Neisseria meningitidis MC58] 138 SCOP206 1-135 -68.200 28  d3or5a_ c.47.1.0 (A:) automated matches {Chlorobaculum tepidum [TaxId: 1097]}
7 gi|15675955|ref|NP_273073.1| ABC transporter ATP-binding protein (NMB0007) [Neisseria meningitidis MC58] 216 SCOP206 1-216 -81.700 36  d2pcja_ c.37.1.0 (A:) automated matches {Aquifex aeolicus [TaxId: 224324]}
8 gi|15675956|ref|NP_273074.1| putative cell division protein FtsX (NMB0008) [Neisseria meningitidis MC58] 305 SCOP206 66-206 -5.830 d1n1fa_ a.26.1.3 (A:) Interleukin-19 {Human (Homo sapiens) [TaxId: 9606]}
9 gi|15675957|ref|NP_273075.1| BolA/YrbA family protein (NMB0009) [Neisseria meningitidis MC58] 82 SCOP206 1-82 -55.200 27  d1ny8a1 d.52.6.1 (A:1-89) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]}
10 gi|15675958|ref|NP_273076.1| phosphoglycerate kinase (NMB0010) [Neisseria meningitidis MC58] 403 SCOP206 2-403 -118.000 59  d1zmra_ c.86.1.1 (A:) Phosphoglycerate kinase {Escherichia coli [TaxId: 562]}
11 gi|15675959|ref|NP_273077.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (NMB0011) [Neisseria meningitidis MC58] 417 SCOP206 1-417 -123.000 60  d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]}
12 gi|15675960|ref|NP_273078.1| hypothetical protein (NMB0012) [Neisseria meningitidis MC58] 323 SCOP206 36-278 -6.580 12  d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}
13 gi|15675961|ref|NP_273079.1| hypothetical protein (NMB0013) [Neisseria meningitidis MC58] 149 SCOP206 5-142 -6.620 11  d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
14 gi|15675962|ref|NP_273080.1| 3-deoxy-D-manno-octulosonic-acid transferase (NMB0014) [Neisseria meningitidis MC58] 423 SCOP206 59-415 -12.500 12  d2iw1a_ c.87.1.8 (A:) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
15 gi|15675963|ref|NP_273081.1| 6-phosphogluconate dehydrogenase (NMB0015) [Neisseria meningitidis MC58] 482 SCOP206 2-176 -81.200 66  d4gwga1 c.2.1.0 (A:1-176) automated matches {Human (Homo sapiens) [TaxId: 9606]}
177-469 -105.000 61  d4gwga2 a.100.1.1 (A:177-469) automated matches {Human (Homo sapiens) [TaxId: 9606]}
16 gi|15675964|ref|NP_273082.1| hypothetical protein (NMB0016) [Neisseria meningitidis MC58] 78 SCOP206 11-67 -6.350 24  d2qvja_ a.260.1.1 (A:) Nucleoprotein {Vesicular stomatitis indiana virus [TaxId: 11277]}
17 gi|15675965|ref|NP_273083.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (NMB0017) [Neisseria meningitidis MC58] 307 SCOP206 2-134 -61.400 32  d3p3ca1 d.14.1.7 (A:2-127) automated matches {Aquifex aeolicus [TaxId: 63363]}
135-286 -73.500 34  d3p3ca2 d.14.1.7 (A:128-273) automated matches {Aquifex aeolicus [TaxId: 63363]}
18 gi|15675966|ref|NP_273084.1|(removed signalp:1-27) pilin PilE (NMB0018) [Neisseria meningitidis MC58] 143 SCOP206 1-142 -68.800 82  d1ay2a_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
19 gi|77358699|ref|YP_338284.1| pilS cassette (NMB0019) [Neisseria meningitidis MC58] 136 SCOP206 1-122 -50.800 30  d1qvea1 d.24.1.1 (A:29-150) Pilin P1 {Pseudomonas aeruginosa [TaxId: 287]}
20 gi|77358700|ref|YP_338285.1| pilS cassette (NMB0020) [Neisseria meningitidis MC58] 124 SCOP206 1-123 -52.600 31  d1qvea1 d.24.1.1 (A:29-150) Pilin P1 {Pseudomonas aeruginosa [TaxId: 287]}


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.