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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 2171next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15675949|ref|NP_273067.1| putative acetyltransferase (NMB0001) [Neisseria meningitidis MC58] 163 VFDB 1-160 -57.200 16  VFG045571(gi:52842629) (lpg2420) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
2 gi|15675950|ref|NP_273068.1|(removed signalp:1-36) hypothetical protein (NMB0002) [Neisseria meningitidis MC58] 95 VFDB 2-82 -9.790 14  VFG000546(gi:16766191) (sipB/sspB) type III secretion system hydrophilic translocator, pore protein SipB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
3 gi|15675951|ref|NP_273069.1| glutamyl-tRNA synthetase (NMB0003) [Neisseria meningitidis MC58] 464 VFDB 15-455 -5.210 VFG000703(gi:30962651) (bsc4) polysaccharide biosynthesis protein Bsc4 [Capsule (VF0043)] [Haemophilus influenzae str. 1007]
4 gi|15675952|ref|NP_273070.1|(removed signalp:1-37) EpiH/GdmH-related protein (NMB0004) [Neisseria meningitidis MC58] 177 VFDB 9-170 -36.300 15  VFG045590(gi:52842834) (lpg2628) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
5 gi|15675953|ref|NP_273071.1| arsenate reductase (NMB0005) [Neisseria meningitidis MC58] 117 VFDB 1-117 -4.650 17  VFG001859(gi:52842863) (feoB) ferrous iron transporter B [FeoAB (VF0160)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
6 gi|15675954|ref|NP_273072.1|(removed signalp:1-22) thioredoxin-related protein (NMB0006) [Neisseria meningitidis MC58] 138 VFDB 1-101 -29.900 12  VFG007176(gi:28898472) (exsD) transcriptional regulator ExsD [T3SS1 (VF0408)] [Vibrio parahaemolyticus RIMD 2210633]
7 gi|15675955|ref|NP_273073.1| ABC transporter ATP-binding protein (NMB0007) [Neisseria meningitidis MC58] 216 VFDB 1-216 -70.800 32  VFG002059(gi:15595271) (tagT) type six secretion associated protein TagT, ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
8 gi|15675956|ref|NP_273074.1| putative cell division protein FtsX (NMB0008) [Neisseria meningitidis MC58] 305 VFDB 17-305 -16.600 11  VFG002058(gi:15595270) (tagS) type IV secretion associated protein TagS, forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
9 gi|15675957|ref|NP_273075.1| BolA/YrbA family protein (NMB0009) [Neisseria meningitidis MC58] 82 VFDB 21-66 -4.740 23  VFG045535(gi:52841911) (ravZ) Dot/Icm type IV secretion system effector RavZ [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
10 gi|15675958|ref|NP_273076.1| phosphoglycerate kinase (NMB0010) [Neisseria meningitidis MC58] 403 VFDB 2-241 -4.460 13  VFG000073(gi:16802247) (plcA) phosphatidylinositol-specific phospholipase c [PlcA (VF0063)] [Listeria monocytogenes EGD-e]
11 gi|15675959|ref|NP_273077.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (NMB0011) [Neisseria meningitidis MC58] 417 VFDB 321-413 -4.490 14  VFG043372(gi:15645019) (cheW) chemotaxis coupling protein CheW [Pse5Ac7Ac (AI150)] [Helicobacter pylori 26695]
12 gi|15675960|ref|NP_273078.1| hypothetical protein (NMB0012) [Neisseria meningitidis MC58] 323 VFDB 84-288 -4.620 13  VFG001235(gi:15595614) (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
13 gi|15675961|ref|NP_273079.1| hypothetical protein (NMB0013) [Neisseria meningitidis MC58] 149 VFDB 12-148 -7.360 13  VFG000019(gi:33594646) (ptlD) Ptl Type IV secretion system VirB6 homolog protein PtlA [Ptx (VF0026)] [Bordetella pertussis Tohama I]
14 gi|15675962|ref|NP_273080.1| 3-deoxy-D-manno-octulosonic-acid transferase (NMB0014) [Neisseria meningitidis MC58] 423 VFDB 1-420 -111.000 37  VFG000141(gi:15600181) (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
15 gi|15675963|ref|NP_273081.1| 6-phosphogluconate dehydrogenase (NMB0015) [Neisseria meningitidis MC58] 482 VFDB 168-467 -4.870 10  VFG002088(gi:15600891) (icmF/vasK) type VI secretion system inner membrane protein VasK [T6SS (VF0335)] [Vibrio cholerae O1 biovar El Tor str. N16961]
16 gi|15675964|ref|NP_273082.1| hypothetical protein (NMB0016) [Neisseria meningitidis MC58] 78 VFDB 1-71 -4.700 16  VFG000289(gi:15645155) (virB6/cagW) type IV secretion system protein Cag9/CagW, VirB6 homolog [Type IV secretion system (VF0060)] [Helicobacter pylori 26695]
17 gi|15675965|ref|NP_273083.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (NMB0017) [Neisseria meningitidis MC58] 307 VFDB 1-306 -120.000 49  VFG013412(gi:16273070) (lpxC) UDP-3-O-(R-3-hydroxymyristoyl)-N-acetylglucosamine deacetylase [LOS (CVF494)] [Haemophilus influenzae Rd KW20]
18 gi|15675966|ref|NP_273084.1|(removed signalp:1-27) pilin PilE (NMB0018) [Neisseria meningitidis MC58] 143 VFDB 1-143 -71.100 100  VFG000221(gi:15675966) (pilE) Type IV pilus major pilin subunit PilE [Type IV pili (VF0075)] [Neisseria meningitidis MC58]
19 gi|77358699|ref|YP_338284.1| pilS cassette (NMB0019) [Neisseria meningitidis MC58] 136 VFDB 1-122 -50.100 82  VFG000221(gi:15675966) (pilE) Type IV pilus major pilin subunit PilE [Type IV pili (VF0075)] [Neisseria meningitidis MC58]
20 gi|77358700|ref|YP_338285.1| pilS cassette (NMB0020) [Neisseria meningitidis MC58] 124 VFDB 1-123 -49.300 75  VFG000221(gi:15675966) (pilE) Type IV pilus major pilin subunit PilE [Type IV pili (VF0075)] [Neisseria meningitidis MC58]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.