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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 7012next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 sp|A0AUZ9|CB067_HUMAN Uncharacterized protein C2orf67 OS=Homo sapiens GN=C2orf67 PE=1 SV=2 (Range: 142-330) 189 VFDB 69-189 -4.800 VFG002055(gi:82778259) (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
2 sp|A0AUZ9|CB067_HUMAN Uncharacterized protein C2orf67 OS=Homo sapiens GN=C2orf67 PE=1 SV=2 (Range: 362-412) 51 VFDB 25-50 -4.140 26  VFG001809(gi:15927587) (tsst-1) toxic shock syndrome toxin-1 [TSST-1 (VF0022)] [Staphylococcus aureus subsp. aureus N315]
3 sp|A0AVF1|TTC26_HUMAN Tetratricopeptide repeat protein 26 OS=Homo sapiens GN=TTC26 PE=2 SV=1 (Range: 486-554) 69 VFDB 1-67 -4.930 16  VFG002569(gi:53720419) (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
4 tr|A0AVG2|A0AVG2_HUMAN TRPM8 protein OS=Homo sapiens GN=TRPM8 PE=2 SV=1 (Range: 1-215) 215 VFDB 80-173 -5.890 10  VFG041248(gi:52840647) (ankY/legA9) Dot/Icm type IV secretion system effector LegA9/AnkY, ankyrin repeat-containing protein targeting the LCV for autophagy uptake [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
5 tr|A0AVG2|A0AVG2_HUMAN TRPM8 protein OS=Homo sapiens GN=TRPM8 PE=2 SV=1 (Range: 240-290) 51 VFDB 13-43 -3.170 25  VFG000158(gi:33591933) (cyaC) cyclolysin-activating lysine-acyltransferase [Cya (VF0028)] [Bordetella pertussis Tohama I]
6 tr|A0AVG2|A0AVG2_HUMAN TRPM8 protein OS=Homo sapiens GN=TRPM8 PE=2 SV=1 (Range: 311-360) 50 VFDB 22-50 -4.470 25  VFG001010(gi:31983541) (spa32) type III secretion system needle length regulator Spa32 [TTSS (VF0118)] [Shigella flexneri 2a str. 301]
7 sp|A0AVI2|FR1L5_HUMAN Fer-1-like protein 5 OS=Homo sapiens GN=FER1L5 PE=2 SV=2 (Range: 431-614) 184 VFDB 14-184 -5.200 11  VFG001299(gi:21281855) (cap8C) capsular polysaccharide synthesis enzyme Cap8C [Capsule (VF0003)] [Staphylococcus aureus subsp. aureus MW2]
8 sp|A0AVI2|FR1L5_HUMAN Fer-1-like protein 5 OS=Homo sapiens GN=FER1L5 PE=2 SV=2 (Range: 1641-1750) 110 VFDB 43-110 -6.620 11  VFG005009(gi:21282488) (sec) staphylococcal enterotoxin C precursor [Enterotoxin C (CVF057)] [Staphylococcus aureus subsp. aureus MW2]
9 sp|A0AVI2|FR1L5_HUMAN Fer-1-like protein 5 OS=Homo sapiens GN=FER1L5 PE=2 SV=2 (Range: 2018-2093) 76 VFDB 1-72 -3.820 22  VFG000321(gi:15644675) (rfbD) GDP-D-mannose dehydratase [LPS (VF0056)] [Helicobacter pylori 26695]
10 sp|A0AVK6|E2F8_HUMAN Transcription factor E2F8 OS=Homo sapiens GN=E2F8 PE=1 SV=1 (Range: 470-543) 74 VFDB 26-72 -5.010 19  VFG002101(gi:52842719) (sidC) Dot/Icm type IV secretion system effector SidC, ER interactor [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
11 sp|A0JNW5|UH1BL_HUMAN UHRF1-binding protein 1-like OS=Homo sapiens GN=UHRF1BP1L PE=1 SV=2 (Range: 117-259) 143 VFDB 1-75 -4.290 VFG002274(gi:18309018) (plc) phospholipase C [alpha-toxin (CpPLC) (VF0378)] [Clostridium perfringens str. 13]
12 sp|A0JNW5|UH1BL_HUMAN UHRF1-binding protein 1-like OS=Homo sapiens GN=UHRF1BP1L PE=1 SV=2 (Range: 309-401) 93 VFDB 10-93 -5.130 15  VFG002220(gi:17988169) (pgm) phosphoglucomutase [LPS (VF0367)] [Brucella melitensis bv. 1 str. 16M]
13 sp|A0JNW5|UH1BL_HUMAN UHRF1-binding protein 1-like OS=Homo sapiens GN=UHRF1BP1L PE=1 SV=2 (Range: 488-662) 175 VFDB 1-123 -5.940 10  VFG041318(gi:52842389) (legS2) Dot/Icm type IV secretion system effector LegS2, targeting mitochondria [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
14 sp|A0JNW5|UH1BL_HUMAN UHRF1-binding protein 1-like OS=Homo sapiens GN=UHRF1BP1L PE=1 SV=2 (Range: 1275-1361) 87 VFDB 1-49 -4.120 18  VFG045491(gi:52840609) (lpg0364) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
15 sp|A0PJM3|GORL_HUMAN Putative exonuclease GOR-like protein OS=Homo sapiens GN=REXO1L2P PE=5 SV=2 (Range: 195-290) 96 VFDB 4-96 -6.950 12  VFG041244(gi:52840539) (ceg10) Dot/Icm type IV secretion system effector Ceg10 [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
16 sp|A0PJM3|GORL_HUMAN Putative exonuclease GOR-like protein OS=Homo sapiens GN=REXO1L2P PE=5 SV=2 (Range: 322-408) 87 VFDB 1-83 -6.570 14  VFG012019(gi:15792639) (pseA) pseudaminic acid biosynthesis PseA protein [Pse5Ac7Ac, Pse5Ac7Am, Pse8OAc, Pse5Am7AcGlnAc (AI151)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
17 sp|A0PJW6|TM223_HUMAN Transmembrane protein 223 OS=Homo sapiens GN=TMEM223 PE=1 SV=1 (Range: 119-202) 84 VFDB 3-72 -7.020 20  VFG017049(gi:15604953) (incB) Inclusion Membrane Protein B [Type III secretion apparatus and effectors (CVF619)] [Chlamydia trachomatis D/UW-3/CX]
18 sp|A0PJX8|TMM82_HUMAN Transmembrane protein 82 OS=Homo sapiens GN=TMEM82 PE=2 SV=2 (Range: 97-285) 189 VFDB 85-188 -6.230 23  VFG041242(gi:52840501) (ceg9) Dot/Icm Type IV secretion system effector Ceg9, manipulating host cell vesicle trafficking factors [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
19 sp|A0PJY2|FEZF1_HUMAN Fez family zinc finger protein 1 OS=Homo sapiens GN=FEZF1 PE=2 SV=1 (Range: 106-243) 138 VFDB 34-134 -4.890 11  VFG000288(gi:15645154) (virB9/cagX) type IV secretion system protein Cag8/CagX, VirB9 homolog [Type IV secretion system (VF0060)] [Helicobacter pylori 26695]
20 sp|A0ZSE6|CC50C_HUMAN Cell cycle control protein 50C OS=Homo sapiens GN=TMEM30C PE=2 SV=2 (Range: 58-113) 56 VFDB 1-55 -3.200 10  VFG012019(gi:15792639) (pseA) pseudaminic acid biosynthesis PseA protein [Pse5Ac7Ac, Pse5Ac7Am, Pse8OAc, Pse5Am7AcGlnAc (AI151)] [Campylobacter jejuni subsp. jejuni NCTC 11168]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.