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anford Burnham Prebys Medical Discovery Institute
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# Query Length Result vs. Range Score %id Covered by template(s)
1 2N4O Entity 1(prereleased) 95 COG0516 24-95 -5.910 11  [O] COG1495 Disulfide bond formation protein DsbB
H.sapiens 1-41 -6.790 24  sp|Q9H8G2|CI082_HUMAN Uncharacterized protein C9orf82 OS=Homo sapiens GN=C9orf82 PE=1 SV=2
HGM_OVER 56-88 -4.570 15  PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
JCSG0516 68-91 -6.180 28  SP19238A YP_095713.1 412192 Purified-2010-09-29
NEW_HUMAN_DOMAINS 71-95 -6.210 32  sp|Q9ULG6|CCPG1_HUMAN Cell cycle progression protein 1 OS=Homo sapiens GN=CCPG1 PE=1 SV=3 (Range: 629-736)
PDB0516 1-94 -39.700 21  2nbh_A mol:protein length:107 Fungal hydrophobin
PfamA30U 19-93 -16.400 28  PF01185.16; E9QT94_ASPFU/42-136; Fungal hydrophobin
SCOP206 73-92 -8.000 25  d4aoga1 b.138.1.0 (A:2-80) automated matches {Neurospora crassa [TaxId: 367110]}
VFDB 17-95 -4.670 17  VFG002320(gi:123442750) (fliB) flagellin lysine-N-methylase [Flagella (VF0394)] [Yersinia enterocolitica subsp. enterocolitica 8081]
2 2N3I Entity 1(prereleased) 94 COG0516 4-93 -22.700 23  [T] KOG1480 Netrin transmembrane receptor unc-5
H.sapiens 3-92 -33.900 27  sp|P53355|DAPK1_HUMAN Death-associated protein kinase 1 OS=Homo sapiens GN=DAPK1 PE=1 SV=6 (Range: 1201-1430)
HGM_OVER 28-94 -3.140 14  PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;
JCSG0516 27-69 -6.370 14  FJ8847A YP_718746.1 370515 Purified-2006-10-23
NEW_HUMAN_DOMAINS 23-89 -5.430 10  sp|O15230|LAMA5_HUMAN Laminin subunit alpha-5 OS=Homo sapiens GN=LAMA5 PE=1 SV=8 (Range: 897-1061)
PDB0516 2-94 -45.800 100  2n83_A mol:protein length:98 Tumor necrosis factor receptor superfamily me
PfamA30U 3-94 -23.000 13  PF14786.4; B4LWB0_DROVI/27-173; Tube Death domain
SCOP206 1-86 -39.500 92  d4f42a_ a.77.1.2 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}
VFDB 26-84 -5.000 20  VFG002074(gi:15595286) (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
3 2NCS Entity 1(prereleased) 36 COG0516 8-36 -5.800 13  [T] KOG3860 Acyltransferase required for palmitoylation of Hedgehog (Hh) family of secreted signaling proteins
H.sapiens 2-23 -5.620 31  sp|Q9UN88|GBRT_HUMAN(removed signalp:1-21) Gamma-aminobutyric acid receptor subunit theta OS=Homo sapiens GN=GABRQ PE=2 SV=2 (Range: 451-611)
HGM_OVER 5-30 -0.949 19  PB028090 gi|167758043|ref|ZP_02430170.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]gi|167663940|gb|EDS08070.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]
JCSG0516 15-31 -5.370 35  SC.B20929E NP_630462.1 427848 Selected-2013-01-04
NEW_HUMAN_DOMAINS 7-35 -4.190 20  sp|Q99460|PSMD1_HUMAN 26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens GN=PSMD1 PE=1 SV=2 (Range: 766-817)
PDB0516 3-31 -27.700 65  3g9r_A mol:protein length:42 Fusion complex of HIV-1 Envelope glycoprotein
PfamA30U 2-26 -5.360 28  PF15349.4; D2I3G1_AILME/1-216; DDB1- and CUL4-associated factor 16
SCOP206 4-31 -3.720 21  d3wmn5_ f.3.1.0 (5:) automated matches {Thermochromatium tepidum [TaxId: 1050]}
VFDB 14-32 -3.560 10  VFG001286(gi:21284316) (icaD) intercellular adhesion protein D, involved in polysaccharide intercellular adhesin(PIA) synthesis [Intercellular adhesion proteins (VF0014)] [Staphylococcus aureus subsp. aureus MW2]
4 2N98 Entity 1(prereleased) 90 COG0516 19-86 -17.600 28  [Q] COG3433 Aryl carrier domain
H.sapiens 3-90 -24.700 23  sp|P49327|FAS_HUMAN Fatty acid synthase OS=Homo sapiens GN=FASN PE=1 SV=3 (Range: 1951-2250)
HGM_OVER 26-84 -4.200 16  HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074;
JCSG0516 5-87 -44.900 28  17135470 17135470 354432 PDB-2005-07-25
NEW_HUMAN_DOMAINS 31-90 -5.670 16  sp|P04035|HMDH_HUMAN 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Homo sapiens GN=HMGCR PE=1 SV=1 (Range: 280-425)
PDB0516 1-87 -47.600 28  2afd_A mol:protein length:88 protein Asl1650
PfamA30U 19-83 -19.100 18  PF00550.23; Q0V6Q6_PHANO/3569-3638; Phosphopantetheine attachment site
SCOP206 16-85 -26.000 27  d2cg5b_ a.28.1.1 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 2-90 -26.400 16  VFG001822(gi:15609518) (mbtD) Polyketide synthetase MbtD (polyketide synthase) [Mycobactin (VF0299)] [Mycobacterium tuberculosis H37Rv]
5 2N2G Entity 1(prereleased) 33 COG0516 4-25 -3.850 40  [K] COG3655 Predicted transcriptional regulator
H.sapiens 4-23 -5.450 35  sp|Q8NDH2|CM040_HUMAN Uncharacterized protein C13orf40 OS=Homo sapiens GN=C13orf40 PE=2 SV=2 (Range: 2101-2400)
HGM_OVER 4-22 -1.730 10  HGC01179 gi|162738527|dbj|BAAZ01025469.1|2.0 TMP01658;
JCSG0516 3-27 -3.960 28  SP19131A YP_001298090.1 409934 Purified-2010-09-29
NEW_HUMAN_DOMAINS 4-28 -5.410 24  tr|E7ES18|E7ES18_HUMAN Uncharacterized protein OS=Homo sapiens GN=PKD1 PE=4 SV=1 (Range: 593-656)
PDB0516 1-33 -28.500 97  2lzy_A mol:protein length:35 ABU8-3
PfamA30U 1-30 -6.970 50  PF11406.6; TACA2_TACTR/24-67; Antimicrobial peptide tachystatin A
SCOP206 1-30 -6.970 50  d1cixa_ g.3.6.2 (A:) Tachystatin {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}
VFDB 2-33 -3.900 12  VFG042520(gi:33469479) (csdA) CS19 fimbrial subunit CsdA [coli surface antigen CS19 (AI032)] [Escherichia coli O114:H- str. WS0115A]
6 2N64 Entity 1(prereleased) 75 COG0516 6-75 -21.200 100  [T] KOG4348 Adaptor protein CMS/SETA
H.sapiens 4-75 -21.300 100  sp|Q96B97|SH3K1_HUMAN SH3 domain-containing kinase-binding protein 1 OS=Homo sapiens GN=SH3KBP1 PE=1 SV=2 (Range: 451-665)
HGM_OVER 24-74 -5.340 14  PB012472 gi|62259485|gb|AAX77857.1| unknown protein [synthetic construct]
JCSG0516 22-75 -7.140 22  C.MS20753A OTU6B-K002 423700 Purified-2011-07-05
NEW_HUMAN_DOMAINS 16-73 -7.140 22  sp|Q14687|GSE1_HUMAN Genetic suppressor element 1 OS=Homo sapiens GN=GSE1 PE=1 SV=3 (Range: 1142-1217)
PDB0516 15-72 -8.090 13  4etp_B mol:protein length:333 Spindle pole body-associated protein VIK1
PfamA30U 18-75 -9.630 27  PF10267.7; I3JPH2_ORENI/72-486; Predicted transmembrane and coiled-coil 2 protein
SCOP206 16-74 -6.970 15  d4dnda_ a.47.2.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 16-75 -6.220 16  VFG045501(gi:52841161) (ravI) Dot/Icm type IV secretion system effector RavI [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
7 4S3U Entity 1(prereleased) 360 COG0516 1-360 -66.500 23  [G] COG3325 Chitinase
H.sapiens 1-360 -137.000 73  sp|P36222|CH3L1_HUMAN(removed signalp:1-21) Chitinase-3-like protein 1 OS=Homo sapiens GN=CHI3L1 PE=1 SV=2
HGM_OVER 70-269 -3.060 PB000790 _Gut.Meta.Jp.0111831_ gi|163310496|dbj|BABD01000203.1||3 (- 2591:4589~0 complete)
JCSG0516 1-360 -50.300 17  GS13820A NP_810545.1 384117 Crystal|NMR-2009-01-09
NEW_HUMAN_DOMAINS 91-197 -6.470 11  sp|Q5XPI4|RN123_HUMAN E3 ubiquitin-protein ligase RNF123 OS=Homo sapiens GN=RNF123 PE=1 SV=1 (Range: 519-638)
PDB0516 1-360 -137.000 73  1hjv_A mol:protein length:362 CHITINASE-3 LIKE PROTEIN 1
PfamA30U 3-337 -67.100 27  PF00704.26; Q9WFU7_9ABAC/160-544; Glycosyl hydrolases family 18
SCOP206 1-293 -107.000 37  d1vf8a1 c.1.8.5 (A:1-245,A:316-373) Chitinase-like lectin ym1, saccharide binding domain {Mouse (Mus musculus) [TaxId: 10090]}
1-353 -86.100 23  d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain {Serratia marcescens [TaxId: 615]}
VFDB 67-334 -5.290 12  VFG002377(gi:123443295) (ddhA) glucose-1-phosphate cytidylyltransferase [O-antigen (VF0392)] [Yersinia enterocolitica subsp. enterocolitica 8081]
8 2N6O Entity 1(prereleased) 35 COG0516 1-33 -4.740 40  [T] KOG3611 Semaphorins
H.sapiens 6-33 -5.580 26  sp|Q92854|SEM4D_HUMAN(removed signalp:1-23) Semaphorin-4D OS=Homo sapiens GN=SEMA4D PE=1 SV=1 (Range: 451-750)
HGM_OVER 5-33 -3.670 20  HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;
JCSG0516 7-31 -4.880 28  FL11352A NP_244738.1 375369 Purified-2007-05-16
NEW_HUMAN_DOMAINS 1-30 -4.210 13  sp|P48357|LEPR_HUMAN Leptin receptor OS=Homo sapiens GN=LEPR PE=1 SV=2 (Range: 873-944)
PDB0516 1-35 -25.100 77  1d1h_A mol:protein length:35 HANATOXIN TYPE 1
PfamA30U 1-30 -5.120 30  PF07740.10; TXHA5_HAPHA/1-33; Ion channel inhibitory toxin
SCOP206 1-34 -24.600 70  d2a2va_ g.3.6.2 (A:) automated matches {Chilobrachys jingzhao [TaxId: 278060]}
VFDB 8-24 -2.490 17  VFG002086(gi:15600889) (vasI) type VI secretion system protein VasI [T6SS (VF0335)] [Vibrio cholerae O1 biovar El Tor str. N16961]
9 2NAZ Entity 1(prereleased) 112 COG0516 2-106 -40.700 36  [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
H.sapiens 14-82 -7.190 13  sp|Q12789|TF3C1_HUMAN General transcription factor 3C polypeptide 1 OS=Homo sapiens GN=GTF3C1 PE=1 SV=4 (Range: 151-450)
HGM_OVER 29-101 -4.190 21  PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;
JCSG0516 2-109 -51.400 40  TM1655 TM1655 283512 Selected-2001-10-12
NEW_HUMAN_DOMAINS 37-99 -5.820 15  sp|O75592|MYCB2_HUMAN Probable E3 ubiquitin-protein ligase MYCBP2 OS=Homo sapiens GN=MYCBP2 PE=1 SV=3 (Range: 3973-4080)
PDB0516 2-109 -68.100 47  2mlk_A mol:protein length:119 RstA
PfamA30U 27-103 -40.000 34  PF00486.26; I0DPC2_PROSM/145-220; Transcriptional regulatory protein, C terminal
SCOP206 5-106 -66.200 49  d4nhja_ a.4.6.0 (A:) automated matches {Klebsiella pneumoniae [TaxId: 573]}
VFDB 2-107 -37.500 25  VFG001386(gi:15607897) (phoP) Possible two component system response transcriptional positive regulator PhoP [PhoP (VF0286)] [Mycobacterium tuberculosis H37Rv]
10 3JB5 Entity 1(prereleased) 315 COG0516 1-307 -33.300 12  [R] COG4653 Predicted phage phi-C31 gp36 major capsid-like protein
H.sapiens 14-111 -5.490 10  sp|Q5SZJ8|BEND6_HUMAN BEN domain-containing protein 6 OS=Homo sapiens GN=BEND6 PE=2 SV=2
HGM_OVER 58-125 -2.610 PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]
JCSG0516 1-75 -35.700 13  RH20230A NP_371415.1 415801 Selected-2009-12-04
1-313 -33.500 13  SP19019A YP_001300101.1 409919 Selected-2009-11-12
NEW_HUMAN_DOMAINS 1-116 -5.670 12  sp|Q8ND23|LR16B_HUMAN Leucine-rich repeat-containing protein 16B OS=Homo sapiens GN=LRRC16B PE=2 SV=2 (Range: 1-120)
PDB0516 1-307 -40.900 15  3qpr_A mol:protein length:385 Major capsid protein
PfamA30U 9-303 -38.600 15  PF05065.11; A6VNQ3_ACTSZ/129-407; Phage capsid family
SCOP206 1-305 -43.700 16  d2ft1a1 d.183.1.1 (A:104-383) Major capsid protein gp5 {Bacteriophage HK97 [TaxId: 37554]}
VFDB 5-315 -6.840 10  VFG000975(gi:15675770) (ska) streptokinase A precursor [Streptokinase (VF0247)] [Streptococcus pyogenes M1 GAS]
11 5A6D Entity 1(prereleased) 249 COG0516 2-249 -98.400 21  [L] KOG1636 DNA polymerase delta processivity factor (proliferating cell nuclear antigen)
H.sapiens 2-249 -98.800 25  sp|P12004|PCNA_HUMAN Proliferating cell nuclear antigen OS=Homo sapiens GN=PCNA PE=1 SV=1
HGM_OVER 1-224 -3.890 PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]
JCSG0516 2-247 -94.800 24  XB5767A 13813548 358905 Crystal|NMR-2005-05-04
NEW_HUMAN_DOMAINS 11-95 -6.140 11  sp|Q8IYD9|CR054_HUMAN Uncharacterized protein C18orf54 OS=Homo sapiens GN=C18orf54 PE=2 SV=1 (Range: 43-141)
PDB0516 1-249 -108.000 82  1ge8_A mol:protein length:249 PROLIFERATION CELL NUCLEAR ANTIGEN
PfamA30U 13-245 -56.400 14  PF04139.11; RAD9B_MOUSE/14-271; Rad9
SCOP206 4-120 -51.700 30  d1ud9a1 d.131.1.2 (A:1-119) Proliferating cell nuclear antigen (PCNA) {Sulfolobus tokodaii [TaxId: 111955]}
126-246 -57.000 81  d1iz5a2 d.131.1.2 (A:126-246) Proliferating cell nuclear antigen (PCNA) {Pyrococcus furiosus [TaxId: 2261]}
VFDB 6-158 -5.620 VFG000183(gi:15598300) (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
12 5A6Q Entity 1(prereleased) 114 COG0516 3-114 -5.580 10  [P] COG5266 ABC-type Co2+ transport system, periplasmic component
H.sapiens 3-100 -8.090 sp|Q9Y4D8|K0614_HUMAN Probable E3 ubiquitin-protein ligase C12orf51 OS=Homo sapiens GN=C12orf51 PE=1 SV=5 (Range: 451-750)
HGM_OVER 86-110 -8.570 28  PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;
JCSG0516 7-114 -10.200 13  SP16582E YP_001304103.1 412685 Selected-2009-11-12
NEW_HUMAN_DOMAINS 101-114 -4.860 35  sp|A1A5C7|S22AN_HUMAN Solute carrier family 22 member 23 OS=Homo sapiens GN=SLC22A23 PE=2 SV=2 (Range: 79-162)
PDB0516 1-114 -77.600 91  4ut5_A mol:protein length:114 LECB LECTIN
PfamA30U 6-113 -59.100 35  PF07472.9; Q7MZN9_PHOLL/457-563; Fucose-binding lectin II (PA-IIL)
SCOP206 1-114 -72.100 69  d1vyya_ b.115.1.1 (A:) Mannose-specific lectin RS-IIL {Ralstonia solanacearum [TaxId: 305]}
VFDB 2-112 -5.290 16  VFG000890(gi:26249418) (papG) P pilus tip adhesin PapG [P fimbriae (VF0220)] [Escherichia coli CFT073]
13 5A7D Entity 1(prereleased) 382 COG0516 1-382 -79.600 62  [T] KOG1130 Predicted G-alpha GTPase interaction protein, contains GoLoco domain
H.sapiens 2-325 -78.600 50  sp|Q86YR5|GPSM1_HUMAN G-protein-signaling modulator 1 OS=Homo sapiens GN=GPSM1 PE=1 SV=2 (Range: 1-300)
36-350 -81.300 29  sp|Q96AY4|TTC28_HUMAN Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1 SV=4 (Range: 451-750)
81-382 -79.100 26  sp|Q96AY4|TTC28_HUMAN Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1 SV=4 (Range: 901-1200)
HGM_OVER 43-130 -4.340 16  PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
JCSG0516 16-382 -84.700 61  MA2702A NP_056412.2 400395 Purified-2009-03-27
NEW_HUMAN_DOMAINS 185-306 -45.300 13  sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=3 (Range: 717-845)
PDB0516 13-349 -88.100 67  4g2v_A mol:protein length:340 G-protein-signaling modulator 2
17-382 -87.500 62  5a6c_A mol:protein length:374 G-PROTEIN-SIGNALING MODULATOR 2, AFADIN
PfamA30U 19-382 -27.700 PF12569.6; A9SDC6_PHYPA/187-705; NMDA receptor-regulated protein 1
20-343 -45.400 10  PF17139.2; R7EHD4_9BACE/12-276; Domain of unknown function (DUF5112 topsan)
SCOP206 1-382 -47.700 18  d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase, OGT {Human (Homo sapiens) [TaxId: 9606]}
VFDB 12-382 -50.300 VFG045530(gi:52841882) (lpg1654) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
14 5A7D Entity 2(prereleased) 341 COG0516 26-339 -22.400 12  [U] KOG4224 Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting
174-339 -25.100 11  [S] KOG4646 Uncharacterized conserved protein, contains ARM repeats
H.sapiens 1-339 -44.100 17  sp|Q1MX18|INSC_HUMAN Protein inscuteable homolog OS=Homo sapiens GN=INSC PE=1 SV=1
HGM_OVER 135-311 -6.010 PB014998 gi|86133284|ref|ZP_01051866.1| hypothetical protein MED152_01230 [Tenacibaculum sp. MED152]gi|85820147|gb|EAQ41294.1| hypothetical protein MED152_01230 [Polaribacter dokdonensis MED152]
JCSG0516 26-339 -17.600 13  RG20647A.BETA_CATENIN BC058926 421819 Purified-2011-12-12
NEW_HUMAN_DOMAINS 186-310 -20.900 tr|D6RE95|D6RE95_HUMAN Uncharacterized protein OS=Homo sapiens GN=RAP1GDS1 PE=4 SV=1 (Range: 1-119)
PDB0516 18-66 -20.800 26  3sf4_D mol:protein length:52 Protein inscuteable homolog
26-311 -20.800 14  3au3_A mol:protein length:344 Adenomatous polyposis coli protein
179-341 -21.700 10  3sla_A mol:protein length:168 Catenin beta-1
PfamA30U 44-341 -21.600 10  PF05804.10; KIFA3_HUMAN/13-720; Kinesin-associated protein (KAP)
SCOP206 26-341 -20.600 12  d3l6xa_ a.118.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 107-334 -6.070 10  VFG000389(gi:16082727) (lcrE/yopN) type III secretion system gatekeeper YopN [TTSS (VF0140)] [Yersinia pestis CO92]
15 5A7E Entity 1(prereleased) 496 COG0516 1-485 -78.200 21  [Q] KOG1263 Multicopper oxidases
H.sapiens 1-464 -29.100 14  sp|P12259|FA5_HUMAN(removed signalp:1-28) Coagulation factor V OS=Homo sapiens GN=F5 PE=1 SV=4 (Range: 1-300)
34-464 -31.600 18  sp|P00451|FA8_HUMAN(removed signalp:1-19) Coagulation factor VIII OS=Homo sapiens GN=F8 PE=1 SV=1 (Range: 451-750)
HGM_OVER 90-262 -4.120 11  PB002776 gi|157737147|ref|YP_001489830.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]gi|157699001|gb|ABV67161.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]
JCSG0516 9-468 -7.310 10  GS6911A YP_001301816.1 384061 Selected-2007-09-11
NEW_HUMAN_DOMAINS 65-241 -4.880 16  sp|Q4KMG0|CDON_HUMAN Cell adhesion molecule-related/down-regulated by oncogenes OS=Homo sapiens GN=CDON PE=1 SV=2 (Range: 989-1164)
PDB0516 1-496 -158.000 99  4a2f_A mol:protein length:497 LACCASE
PfamA30U 10-131 -50.800 37  PF07732.13; LAC5_ARATH/34-150; Multicopper oxidase
142-283 -62.700 70  PF00394.20; Q9UVU8_PYCCI/165-307; Multicopper oxidase
309-477 -15.400 16  PF06525.9; SOXE_SULAC/49-198; Sulfocyanin (SoxE) domain
346-469 -48.300 29  PF07731.12; Q875H3_PHACH/405-542; Multicopper oxidase
SCOP206 1-130 -76.800 86  d3pxla1 b.6.1.0 (A:1-130) automated matches {Trametes hirsuta [TaxId: 5327]}
131-299 -68.100 72  d3pxla2 b.6.1.0 (A:131-300) automated matches {Trametes hirsuta [TaxId: 5327]}
300-496 -77.300 78  d3pxla3 b.6.1.0 (A:301-499) automated matches {Trametes hirsuta [TaxId: 5327]}
VFDB 10-470 -5.220 VFG001280(gi:21282246) (sdrD) Ser-Asp rich fibrinogen-binding bone sialoprotein-binding protein [SDr (VF0019)] [Staphylococcus aureus subsp. aureus MW2]
16 5A8C Entity 1(prereleased) 320 COG0516 18-306 -26.700 18  [G] COG3507 Beta-xylosidase
H.sapiens 30-277 -8.320 14  sp|Q9NRN5|OLFL3_HUMAN(removed signalp:1-21) Olfactomedin-like protein 3 OS=Homo sapiens GN=OLFML3 PE=2 SV=1
HGM_OVER 30-320 -4.460 PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;
JCSG0516 1-320 -87.900 29  PX9010J YP_001302720.1 396106 Purified-2009-05-08
NEW_HUMAN_DOMAINS 98-205 -5.150 sp|O43593|HAIR_HUMAN Protein hairless OS=Homo sapiens GN=HR PE=1 SV=5 (Range: 837-958)
PDB0516 13-320 -98.800 37  3qed_A mol:protein length:314 Beta-xylosidase/alpha-L-arabinfuranosidase, g
PfamA30U 22-308 -33.600 20  PF04616.12; Q9K6P5_BACHD/5-295; Glycosyl hydrolases family 43
SCOP206 8-306 -38.200 21  d3cu9a_ b.67.2.1 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}
VFDB 44-307 -8.360 12  VFG001361(gi:15900059) (pspA) pneumococcal surface protein A [PspA (VF0152)] [Streptococcus pneumoniae TIGR4]
17 5A8F Entity 1(prereleased) 219 COG0516 1-205 -6.950 [T] KOG0787 Dehydrogenase kinase
H.sapiens 68-212 -10.000 11  sp|P24394|IL4RA_HUMAN(removed signalp:1-23) Interleukin-4 receptor subunit alpha OS=Homo sapiens GN=IL4R PE=1 SV=1 (Range: 1-300)
HGM_OVER 12-211 -3.700 10  PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;
JCSG0516 14-219 -8.690 10  SP13496N ZP_03459572.1 407494 Selected-2009-11-12
NEW_HUMAN_DOMAINS 83-219 -5.860 sp|Q8NBJ9|SIDT2_HUMAN SID1 transmembrane family member 2 OS=Homo sapiens GN=SIDT2 PE=1 SV=2 (Range: 19-169)
PDB0516 1-219 -85.300 52  1tme_1 mol:protein length:274 THEILER`S MURINE ENCEPHALOMYELITIS VIRUS (SUB
PfamA30U 38-216 -15.300 11  PF08762.8; O56051_9VIRU/590-790; CRPV capsid protein like
70-213 -21.600 10  PF12264.6; O11979_9SECO/708-904; Waikavirus capsid protein 1
SCOP206 1-219 -81.500 47  d2mev1_ b.121.4.1 (1:) Mengo encephalomyocarditis virus coat proteins {Mengovirus [TaxId: 12107]}
VFDB 83-207 -6.880 VFG000420(gi:16082874) (caf1M) putative F1 chaperone protein [F1 antigen (VF0138)] [Yersinia pestis CO92]
18 5A8F Entity 3(prereleased) 258 COG0516 74-249 -6.630 11  [J] COG1491 Predicted RNA-binding protein
H.sapiens 101-250 -6.910 10  sp|O95477|ABCA1_HUMAN(removed signalp:1-44) ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1 PE=1 SV=3 (Range: 1051-1350)
HGM_OVER 100-200 -4.120 PB071107 _Gut.Meta.Jp.0066071_ gi|162701604|dbj|BAAY01026246.1||2 (+ 344:749~0 complete)
JCSG0516 3-241 -5.930 SP16682A NP_812352.1 409131 Purified-2012-06-06
NEW_HUMAN_DOMAINS 179-210 -6.390 18  sp|P78312|F193A_HUMAN Protein FAM193A OS=Homo sapiens GN=FAM193A PE=1 SV=2 (Range: 409-480)
PDB0516 1-257 -113.000 40  3cji_C mol:protein length:284 Polyprotein
PfamA30U 1-258 -50.500 PF00915.18; CAPSD_FCVUR/112-395; Calicivirus coat protein
32-257 -56.200 13  PF12264.6; O11979_9SECO/708-904; Waikavirus capsid protein 1
SCOP206 1-258 -106.000 29  g1aym.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human rhinovirus 16, (HRV-16) [TaxId: 31708]}
VFDB 74-255 -4.870 15  VFG041254(gi:52840763) (lpg0518) Dot/Icm type IV secretion system effector [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
19 5A8F Entity 2(prereleased) 189 COG0516 63-167 -6.280 15  [I] KOG2848 1-acyl-sn-glycerol-3-phosphate acyltransferase
H.sapiens 63-189 -7.230 10  sp|Q75T13|PGAP1_HUMAN(removed signalp:1-24) GPI inositol-deacylase OS=Homo sapiens GN=PGAP1 PE=2 SV=1 (Range: 451-750)
HGM_OVER 70-189 -4.640 PB038401 Q8RFH0_FUSNN/1-210 PB038401; Pfam-B_38401;
JCSG0516 70-189 -7.410 SP19434A YP_095221.1 412260 Purified-2010-11-20
NEW_HUMAN_DOMAINS 35-188 -7.990 sp|Q8N6T0|CK080_HUMAN Putative uncharacterized protein C11orf80 OS=Homo sapiens GN=C11orf80 PE=2 SV=1 (Range: 1-247)
PDB0516 1-189 -81.800 81  1tmf_3 mol:protein length:232 THEILER`S MURINE ENCEPHALOMYELITIS VIRUS (SUB
PfamA30U 1-189 -63.300 15  PF00915.18; CAPSD_FCVUR/112-395; Calicivirus coat protein
SCOP206 1-189 -80.700 80  d1tme3_ b.121.4.1 (3:) Theilovirus capsid proteins {Theiler`s murine encephalomyelitis virus, strain da [TaxId: 12124]}
VFDB 27-99 -5.990 VFG000553(gi:16766198) (invJ) type III secretion system needle length regulator InvJ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
20 5A8K Entity 1(prereleased) 550 COG0516 2-550 -184.000 71  [H] COG4058 Methyl coenzyme M reductase, alpha subunit
H.sapiens 1-210 -6.600 17  sp|Q9Y6X6|MYO16_HUMAN Myosin-XVI OS=Homo sapiens GN=MYO16 PE=1 SV=3 (Range: 301-600)
HGM_OVER 1-190 -3.570 13  HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;
JCSG0516 17-294 -5.920 13  TM1220 TM1220 283085 Purified-2002-01-08
NEW_HUMAN_DOMAINS 63-238 -5.800 11  sp|Q9C0C9|UBE2O_HUMAN Ubiquitin-conjugating enzyme E2 O OS=Homo sapiens GN=UBE2O PE=1 SV=3 (Range: 116-311)
PDB0516 1-550 -190.000 99  3pot_A mol:protein length:550 Methyl-coenzyme M reductase I subunit alpha
PfamA30U 3-268 -112.000 63  PF02745.13; A0B6N6_METTP/7-276; Methyl-coenzyme M reductase alpha subunit, N-terminal domain
316-441 -45.500 78  PF02249.15; MCRX_METTH/318-443; Methyl-coenzyme M reductase alpha subunit, C-terminal domain
SCOP206 2-269 -116.000 99  d1hbna2 d.58.31.2 (A:2-269) Alpha chain {Methanobacterium thermoautotrophicum [TaxId: 145262]}
270-549 -96.100 98  d1hbna1 a.89.1.1 (A:270-549) Alpha chain {Methanobacterium thermoautotrophicum [TaxId: 145262]}
VFDB 39-546 -5.970 13  VFG002033(gi:13507880) (p1/MgPa/gapA) ADP1_MYCPN adhesin P1 [Cytadherence organelle (VF0330)] [Mycoplasma pneumoniae M129]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.