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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 51500next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 2N4O Entity 1(prereleased) 95 SCOP206 73-92 -8.000 25  d4aoga1 b.138.1.0 (A:2-80) automated matches {Neurospora crassa [TaxId: 367110]}
2 2N3I Entity 1(prereleased) 94 SCOP206 1-86 -39.500 92  d4f42a_ a.77.1.2 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}
3 2NCS Entity 1(prereleased) 36 SCOP206 4-31 -3.720 21  d3wmn5_ f.3.1.0 (5:) automated matches {Thermochromatium tepidum [TaxId: 1050]}
4 2N98 Entity 1(prereleased) 90 SCOP206 16-85 -26.000 27  d2cg5b_ a.28.1.1 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
5 2N2G Entity 1(prereleased) 33 SCOP206 1-30 -6.970 50  d1cixa_ g.3.6.2 (A:) Tachystatin {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}
6 2N64 Entity 1(prereleased) 75 SCOP206 16-74 -6.970 15  d4dnda_ a.47.2.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
7 4S3U Entity 1(prereleased) 360 SCOP206 1-293 -107.000 37  d1vf8a1 c.1.8.5 (A:1-245,A:316-373) Chitinase-like lectin ym1, saccharide binding domain {Mouse (Mus musculus) [TaxId: 10090]}
1-353 -86.100 23  d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain {Serratia marcescens [TaxId: 615]}
8 2N6O Entity 1(prereleased) 35 SCOP206 1-34 -24.600 70  d2a2va_ g.3.6.2 (A:) automated matches {Chilobrachys jingzhao [TaxId: 278060]}
9 2NAZ Entity 1(prereleased) 112 SCOP206 5-106 -66.200 49  d4nhja_ a.4.6.0 (A:) automated matches {Klebsiella pneumoniae [TaxId: 573]}
10 3JB5 Entity 1(prereleased) 315 SCOP206 1-305 -43.700 16  d2ft1a1 d.183.1.1 (A:104-383) Major capsid protein gp5 {Bacteriophage HK97 [TaxId: 37554]}
11 5A6D Entity 1(prereleased) 249 SCOP206 4-120 -51.700 30  d1ud9a1 d.131.1.2 (A:1-119) Proliferating cell nuclear antigen (PCNA) {Sulfolobus tokodaii [TaxId: 111955]}
126-246 -57.000 81  d1iz5a2 d.131.1.2 (A:126-246) Proliferating cell nuclear antigen (PCNA) {Pyrococcus furiosus [TaxId: 2261]}
12 5A6Q Entity 1(prereleased) 114 SCOP206 1-114 -72.100 69  d1vyya_ b.115.1.1 (A:) Mannose-specific lectin RS-IIL {Ralstonia solanacearum [TaxId: 305]}
13 5A7D Entity 1(prereleased) 382 SCOP206 1-382 -47.700 18  d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase, OGT {Human (Homo sapiens) [TaxId: 9606]}
14 5A7D Entity 2(prereleased) 341 SCOP206 26-341 -20.600 12  d3l6xa_ a.118.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
15 5A7E Entity 1(prereleased) 496 SCOP206 1-130 -76.800 86  d3pxla1 b.6.1.0 (A:1-130) automated matches {Trametes hirsuta [TaxId: 5327]}
131-299 -68.100 72  d3pxla2 b.6.1.0 (A:131-300) automated matches {Trametes hirsuta [TaxId: 5327]}
300-496 -77.300 78  d3pxla3 b.6.1.0 (A:301-499) automated matches {Trametes hirsuta [TaxId: 5327]}
16 5A8C Entity 1(prereleased) 320 SCOP206 8-306 -38.200 21  d3cu9a_ b.67.2.1 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}
17 5A8F Entity 1(prereleased) 219 SCOP206 1-219 -81.500 47  d2mev1_ b.121.4.1 (1:) Mengo encephalomyocarditis virus coat proteins {Mengovirus [TaxId: 12107]}
18 5A8F Entity 3(prereleased) 258 SCOP206 1-258 -106.000 29  g1aym.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human rhinovirus 16, (HRV-16) [TaxId: 31708]}
19 5A8F Entity 2(prereleased) 189 SCOP206 1-189 -80.700 80  d1tme3_ b.121.4.1 (3:) Theilovirus capsid proteins {Theiler`s murine encephalomyelitis virus, strain da [TaxId: 12124]}
20 5A8K Entity 1(prereleased) 550 SCOP206 2-269 -116.000 99  d1hbna2 d.58.31.2 (A:2-269) Alpha chain {Methanobacterium thermoautotrophicum [TaxId: 145262]}
270-549 -96.100 98  d1hbna1 a.89.1.1 (A:270-549) Alpha chain {Methanobacterium thermoautotrophicum [TaxId: 145262]}


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.