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# Query Length Result vs. Range Score %id Covered by template(s)
1 PF10417.7; A4AVJ3_MARSH/157-196; C-terminal domain of 1-Cys peroxiredoxin 40 COG0516 1-32 -5.310 28  [O] KOG0852 Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes
H.sapiens 1-40 -21.900 55  sp|P30041|PRDX6_HUMAN Peroxiredoxin-6 OS=Homo sapiens GN=PRDX6 PE=1 SV=3
HGM_OVER 1-39 -1.210 10  PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;
JCSG0516 1-40 -13.700 37  TM0807 TM0807 282677 Purified-2001-04-19
NEW_HUMAN_DOMAINS 10-36 -8.780 22  sp|P08F94|PKHD1_HUMAN Fibrocystin OS=Homo sapiens GN=PKHD1 PE=1 SV=1 (Range: 2053-2142)
PDB0516 1-40 -22.500 40  1xcc_A mol:protein length:220 1-Cys peroxiredoxin
PfamA30U 8-40 -4.710 22  PF10371.7; R6XF60_9FIRM/623-679; Domain of unknown function
SCOP206 1-40 -21.100 47  d2v2ga_ c.47.1.10 (A:) automated matches {Arenicola marina [TaxId: 6344]}
VFDB 1-40 -4.180 20  VFG000967(gi:15675354) (hylP) hyaluronidase, phage associated [Hyaluronidase (VF0246)] [Streptococcus pyogenes M1 GAS]
2 PF12574.6; SCA4_RICPR/92-337; 120 KDa Rickettsia surface antigen 246 COG0516 1-176 -5.310 11  [S] COG5448 Uncharacterized conserved protein
H.sapiens 16-227 -5.720 12  sp|Q9ULK0|GRID1_HUMAN(removed signalp:1-20) Glutamate receptor delta-1 subunit OS=Homo sapiens GN=GRID1 PE=2 SV=2 (Range: 451-750)
HGM_OVER 6-85 -5.630 13  HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397;
JCSG0516 8-236 -5.850 GS13601A YP_213392.1 385039 Purified-2008-05-17
NEW_HUMAN_DOMAINS 31-83 -5.450 13  sp|Q9H2P0|ADNP_HUMAN Activity-dependent neuroprotector homeobox protein OS=Homo sapiens GN=ADNP PE=1 SV=1 (Range: 1-73)
PDB0516 1-243 -102.000 74  4lq8_A mol:protein length:340 Sca-family protein
PfamA30U 6-85 -7.240 PF12960.5; L0F7B8_DESDL/8-136; Protein of unknown function (DUF3849 topsan)
SCOP206 42-133 -5.990 16  d1uz3a_ a.283.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 7-117 -5.960 13  VFG045557(gi:52842363) (lpg2149) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
3 PF09847.7; O29125_ARCFU/30-435; Membrane protein of 12 TMs 406 COG0516 1-404 -110.000 100  [R] COG3368 Predicted permease
H.sapiens 108-302 -9.130 11  sp|Q8NC44|F134A_HUMAN Protein FAM134A OS=Homo sapiens GN=FAM134A PE=1 SV=3
HGM_OVER 66-121 -3.150 14  PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;
JCSG0516 6-406 -29.800 12  TM0794 TM0794 282664 Purified-2004-02-02
NEW_HUMAN_DOMAINS 193-286 -5.350 16  sp|Q14679|TTLL4_HUMAN Tubulin polyglutamylase TTLL4 OS=Homo sapiens GN=TTLL4 PE=1 SV=2 (Range: 965-1074)
PDB0516 28-297 -6.560 11  4xee_A mol:protein length:541 Neurotensin receptor type 1, Endolysin chimer
PfamA30U 1-403 -23.100 13  PF16949.3; B4D3C0_9BACT/40-578; Putative ATP-binding cassette
SCOP206 238-303 -5.540 d3tv3l2 b.1.1.2 (L:108-211) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 216-373 -7.700 12  VFG045333(gi:588561366) (llsH) ABC transporter permease protein LlsH [LLS (VF0410)] [Listeria innocua SLCC6294]
4 PF00244.18; G1K9B0_ANOCA/9-229; 14-3-3 protein 221 COG0516 1-221 -132.000 81  [O] KOG0841 Multifunctional chaperone (14-3-3 family)
H.sapiens 1-221 -132.000 96  sp|P27348|1433T_HUMAN 14-3-3 protein theta OS=Homo sapiens GN=YWHAQ PE=1 SV=1
HGM_OVER 100-220 -3.870 13  PB017124 _Gut.Meta.Jp.0039711_ gi|162659581|dbj|BAAX01000024.1||2 (+ 385:1498~0 complete)
JCSG0516 1-221 -132.000 96  WT2292C.YWHAQ BC093019 422862 Crystal|NMR-2011-09-30
NEW_HUMAN_DOMAINS 53-221 -6.490 10  sp|Q9P278|FNIP2_HUMAN Folliculin-interacting protein 2 OS=Homo sapiens GN=FNIP2 PE=1 SV=2 (Range: 312-450)
PDB0516 1-221 -133.000 72  3o8i_A mol:protein length:239 14-3-3 protein sigma
PfamA30U 10-165 -16.500 18  PF05823.10; Q9XUB7_CAEEL/32-181; Nematode fatty acid retinoid binding protein (Gp-FAR-1)
SCOP206 1-221 -133.000 72  d3mhra1 a.118.7.1 (A:1-231) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 9-216 -5.310 10  VFG000381(gi:16082719) (lcrV) type III secretion system hydrophilic translocator, needle tip protein LcrV [TTSS (VF0140)] [Yersinia pestis CO92]
5 PF16998.3; W6RDF8_9RHIZ/37-150; 17 kDa outer membrane surface antigen 114 COG0516 2-110 -45.200 16  [M] COG4520 Surface antigen
H.sapiens 55-111 -8.280 17  sp|Q8WWA0|ITLN1_HUMAN(removed signalp:1-16) Intelectin-1 OS=Homo sapiens GN=ITLN1 PE=1 SV=1
HGM_OVER 26-85 -4.450 19  PB002776 gi|157737147|ref|YP_001489830.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]gi|157699001|gb|ABV67161.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]
JCSG0516 8-111 -31.300 11  SP18527B ZP_03311701.1 410654 Purified-2010-09-29
NEW_HUMAN_DOMAINS 13-108 -6.150 10  sp|O14525|ASTN1_HUMAN Astrotactin-1 OS=Homo sapiens GN=ASTN1 PE=1 SV=3 (Range: 1153-1302)
PDB0516 49-108 -8.370 13  1u34_A mol:protein length:119 Corticotropin releasing factor receptor 2
PfamA30U 9-111 -34.100 12  PF16587.3; B8J263_DESDA/16-118; 17 kDa common-antigen outer membrane protein
SCOP206 49-108 -7.730 13  d1u34a1 g.76.1.1 (A:39-133) Corticotropin releasing factor receptor 2, CRFR-2beta {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 50-113 -4.950 15  VFG043732(gi:23574038) (cdtA) cytolethal distending toxin A [CDT (VF0185)] [Escherichia coli O157:H str. 493/89]
6 PF00389.28; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 306 COG0516 1-306 -101.000 48  [HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases
H.sapiens 1-306 -98.100 43  sp|O43175|SERA_HUMAN D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4
HGM_OVER 29-145 -3.690 13  HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;
JCSG0516 1-297 -114.000 42  TM1401 TM1401 283262 Purified-2002-01-08
NEW_HUMAN_DOMAINS 81-208 -4.430 15  sp|Q8TAX0|OSR1_HUMAN Protein odd-skipped-related 1 OS=Homo sapiens GN=OSR1 PE=2 SV=1 (Range: 1-141)
PDB0516 1-304 -117.000 43  2g76_A mol:protein length:335 D-3-phosphoglycerate dehydrogenase
PfamA30U 100-274 -64.100 35  PF02826.17; Q98GE4_RHILO/107-283; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
SCOP206 1-120 -48.900 36  d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}
91-274 -89.800 45  d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}
VFDB 71-248 -5.590 13  VFG001349(gi:22537330) (cpsD) CpsD autokinase [Capsule (VF0274)] [Streptococcus agalactiae 2603V/R]
7 PF02826.17; Q98GE4_RHILO/107-283; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 177 COG0516 1-177 -63.600 35  [K] KOG0067 Transcription factor CtBP
H.sapiens 1-177 -79.300 35  sp|Q9UBQ7|GRHPR_HUMAN Glyoxylate reductase/hydroxypyruvate reductase OS=Homo sapiens GN=GRHPR PE=1 SV=1
HGM_OVER 22-177 -4.910 PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]
JCSG0516 1-177 -67.100 34  TM1401 TM1401 283262 Purified-2002-01-08
NEW_HUMAN_DOMAINS 62-162 -5.670 15  sp|Q9NX45|SOLH2_HUMAN Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2 OS=Homo sapiens GN=SOHLH2 PE=2 SV=2 (Range: 1-196)
PDB0516 1-177 -79.300 35  2gcg_A mol:protein length:330 Glyoxylate reductase/hydroxypyruvate reductas
PfamA30U 1-177 -64.100 35  PF00389.28; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
SCOP206 1-177 -81.900 28  d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}
VFDB 41-162 -5.750 12  VFG001268(gi:15599420) (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
8 PF00198.21; A4ICH2_LEIIN/226-463; 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 238 COG0516 1-238 -98.300 44  [C] KOG0557 Dihydrolipoamide acetyltransferase
H.sapiens 1-236 -98.900 45  sp|O00330|ODPX_HUMAN Pyruvate dehydrogenase protein X component, mitochondrial OS=Homo sapiens GN=PDHX PE=1 SV=3
36-238 -110.000 49  sp|P10515|ODP2_HUMAN Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DLAT PE=1 SV=3 (Range: 451-647)
HGM_OVER 56-176 -3.430 12  HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;
JCSG0516 4-231 -13.200 12  XB5742A NP_812031.1 358880 Diffraction|HSQC-2005-09-07
NEW_HUMAN_DOMAINS 3-161 -5.130 sp|Q13535|ATR_HUMAN Serine/threonine-protein kinase ATR OS=Homo sapiens GN=ATR PE=1 SV=3 (Range: 1370-1593)
PDB0516 1-238 -123.000 50  3b8k_A mol:protein length:239 Dihydrolipoyllysine-residue acetyltransferase
PfamA30U 4-227 -16.100 PF00302.16; B4ET40_PROMH/8-209; Chloramphenicol acetyltransferase
SCOP206 5-238 -72.800 33  d3maea_ c.43.1.0 (A:) automated matches {Listeria monocytogenes [TaxId: 265669]}
VFDB 59-175 -6.640 12  VFG034754(gi:15802132) (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
9 PF16078.3; H6C9R5_EXODN/72-112; 2-oxoglutarate dehydrogenase N-terminus 41 COG0516 1-41 -15.500 31  [C] COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes
H.sapiens 1-41 -20.700 48  sp|Q02218|ODO1_HUMAN 2-oxoglutarate dehydrogenase, mitochondrial OS=Homo sapiens GN=OGDH PE=1 SV=3 (Range: 1-300)
HGM_OVER 6-39 -2.190 14  PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]
JCSG0516 7-41 -3.870 14  MA0557A NP_004332.2 400202 Selected-2008-12-22
NEW_HUMAN_DOMAINS 4-41 -7.550 10  sp|Q7Z3U7|MON2_HUMAN Protein MON2 homolog OS=Homo sapiens GN=MON2 PE=1 SV=2 (Range: 656-712)
PDB0516 1-41 -15.500 29  2jgd_A mol:protein length:933 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT
PfamA30U 12-41 -5.850 13  PF13286.4; A4G9P1_HERAR/283-375; Phosphohydrolase-associated domain
SCOP206 2-39 -5.020 21  d1j1na_ c.94.1.1 (A:) Alginate-binding periplasmic protein AlgQ2 {Sphingomonas sp. [TaxId: 28214]}
VFDB 2-41 -3.530 22  VFG001293(gi:21282773) (hly/hla) Alpha-Hemolysin precursor [
10 PF04029.12; H1YDD2_9SPHI/8-231; 2-phosphosulpholactate phosphatase 224 COG0516 13-224 -86.100 32  [HR] COG2045 Phosphosulfolactate phosphohydrolase and related enzymes
H.sapiens 3-221 -7.450 11  sp|O00116|ADAS_HUMAN Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Homo sapiens GN=AGPS PE=1 SV=1 (Range: 151-450)
HGM_OVER 69-133 -4.970 15  PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]
JCSG0516 1-224 -86.700 30  TB0797A 15026306 357129 PDB-2005-01-26
NEW_HUMAN_DOMAINS 14-128 -4.750 13  sp|Q9NX45|SOLH2_HUMAN Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2 OS=Homo sapiens GN=SOHLH2 PE=2 SV=2 (Range: 1-196)
PDB0516 1-224 -86.200 31  1vr0_A mol:protein length:247 Probable 2-phosphosulfolactate phosphatase
PfamA30U 79-175 -5.850 13  PF03313.13; K4KGR3_SIMAS/184-453; Serine dehydratase alpha chain
SCOP206 1-224 -86.700 30  d1vr0a1 c.148.1.1 (A:1-235) 2-phosphosulfolactate phosphatase ComB {Clostridium acetobutylicum [TaxId: 1488]}
VFDB 6-124 -6.240 VFG001225(gi:15595605) (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
11 PF16620.3; L5L3U3_PTEAL/250-410; Unstructured linker between I-set domains 2 and 3 on MYLCK 161 COG0516 1-159 -16.300 11  [Z] KOG3756 Pinin (desmosome-associated protein)
H.sapiens 1-161 -24.400 sp|P49750|YLPM1_HUMAN YLP motif-containing protein 1 OS=Homo sapiens GN=YLPM1 PE=1 SV=3 (Range: 601-900)
39-138 -27.300 sp|Q9H307|PININ_HUMAN Pinin OS=Homo sapiens GN=PNN PE=1 SV=4 (Range: 301-600)
HGM_OVER 1-80 -4.970 PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF
JCSG0516 1-161 -21.600 SP18146A NP_345481.1 413783 Selected-2009-11-12
37-161 -30.400 15  SP2802D ZP_02044512.1 406565 Selected-2009-11-12
NEW_HUMAN_DOMAINS 56-161 -7.250 11  sp|Q9HAP2|MLXIP_HUMAN MLX-interacting protein OS=Homo sapiens GN=MLXIP PE=1 SV=2 (Range: 414-523)
PDB0516 5-159 -11.900 5izt_A mol:protein length:396 Outer surface protein
37-160 -15.600 5fz2_A mol:protein length:904 ENVELOPE GLYCOPROTEIN B
PfamA30U 1-157 -22.100 12  PF05934.9; CLCC1_RAT/3-541; Mid-1-related chloride channel (MCLC)
38-136 -31.800 10  PF05887.9; PAR1_TRYBB/1-143; Procyclic acidic repetitive protein (PARP)
SCOP206 41-133 -3.270 d2b5lc_ d.384.1.1 (C:) SV5-V core {Simian virus 5 [TaxId: 11207]}
VFDB 1-161 -20.200 VFG000337(gi:16272928) (iga1) immunoglobin A1 protease [IgA1 protease (VF0045)] [Haemophilus influenzae Rd KW20]
48-161 -24.000 11  VFG000117(gi:15600446) (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
12 PF05635.9; K7WXD0_9NOST/8-110; 23S rRNA-intervening sequence protein 103 COG0516 27-64 -6.100 18  [V] COG1968 Uncharacterized bacitracin resistance protein
H.sapiens 1-102 -7.030 15  sp|Q8IVF4|DYH10_HUMAN Dynein heavy chain 10, axonemal OS=Homo sapiens GN=DNAH10 PE=1 SV=4 (Range: 3901-4200)
HGM_OVER 1-90 -3.900 12  PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;
JCSG0516 1-101 -24.800 20  PC05635E NP_809265.1 361321 PDB-2007-10-18
NEW_HUMAN_DOMAINS 3-75 -7.330 12  sp|Q8NI27|THOC2_HUMAN THO complex subunit 2 OS=Homo sapiens GN=THOC2 PE=1 SV=2 (Range: 431-567)
PDB0516 1-103 -69.900 35  2gsc_A mol:protein length:128 Putative uncharacterized protein XCC0516
PfamA30U 2-56 -7.220 16  PF16180.3; H2QGK5_PANTR/18-103; RelB leucine zipper
SCOP206 1-103 -71.500 35  d2gsca1 a.29.16.1 (A:9-125) Uncharacterized protein XCC0516 {Xanthomonas campestris pv. campestris [TaxId: 340]}
VFDB 12-102 -3.960 11  VFG041336(gi:52842660) (ankF/legA14/ceg31) Dot/Icm type IV secretion system effector AnkF/LegA14/Ceg31 [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
13 PF08521.8; B1Y781_LEPCP/20-172; Two-component sensor kinase N-terminal 153 COG0516 62-153 -5.910 14  [BK] KOG2535 RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase
H.sapiens 16-152 -6.920 10  sp|Q96KV7|WDR90_HUMAN WD repeat-containing protein 90 OS=Homo sapiens GN=WDR90 PE=1 SV=2 (Range: 1-300)
HGM_OVER 1-87 -5.750 10  PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;
JCSG0516 28-91 -7.130 16  FM11814A YP_316020.1 378158 Purified-2007-08-13
NEW_HUMAN_DOMAINS 31-88 -6.700 14  sp|Q9UPR5|NAC2_HUMAN Sodium/calcium exchanger 2 OS=Homo sapiens GN=SLC8A2 PE=2 SV=2 (Range: 310-367)
PDB0516 1-153 -23.500 17  2kse_A mol:protein length:186 Sensor protein qseC
PfamA30U 1-89 -9.990 11  PF08918.8; H2IU53_RAHAC/9-187; PhoQ Sensor
SCOP206 13-127 -6.920 14  d3rvca_ d.299.1.1 (A:) automated matches {Influenza A virus [TaxId: 381517]}
VFDB 1-153 -5.010 11  VFG043518(gi:29134931) (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
14 PF08793.8; Q0E553_SFAVA/142-176; 2-cysteine adaptor domain 35 COG0516 1-29 -4.210 24  [S] COG4042 Predicted membrane protein
H.sapiens 12-28 -6.670 58  sp|Q9BYB0|SHAN3_HUMAN SH3 and multiple ankyrin repeat domains protein 3 OS=Homo sapiens GN=SHANK3 PE=1 SV=2 (Range: 1051-1350)
HGM_OVER 4-28 -2.350 16  PB092941 Q45777_BACTN/1-139 PB092941; Pfam-B_92941;
JCSG0516 9-34 -4.340 23  SP17786A ZP_02423032.1 411250 Selected-2009-11-12
NEW_HUMAN_DOMAINS 12-31 -5.930 40  sp|Q7Z4H7|HAUS6_HUMAN HAUS augmin-like complex subunit 6 OS=Homo sapiens GN=HAUS6 PE=1 SV=2 (Range: 562-647)
PDB0516 7-35 -5.280 28  1jy4_A mol:protein length:35 B4DIMER
PfamA30U 3-18 -4.920 31  PF16646.3; G3PCY6_GASAC/4-71; Axin-1 tankyrase binding domain
SCOP206 14-34 -4.740 28  d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}
VFDB 3-34 -2.290 18  VFG043208(gi:123442799) (cheR) chemotaxis methyltransferase CheR [peritrichous flagella (AI145)] [Yersinia enterocolitica subsp. enterocolitica 8081]
15 PF11591.6; D8UJ95_VOLCA/1-34; Ferredoxin chloroplastic transit peptide 34 COG0516 1-32 -3.430 18  [S] KOG4811 Uncharacterized conserved protein
H.sapiens 14-31 -6.790 44  sp|Q5SRD0|FA21D_HUMAN Putative WASH complex subunit FAM21 OS=Homo sapiens GN=FAM21D PE=3 SV=2
HGM_OVER 1-33 -1.170 HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679;
JCSG0516 16-26 -4.920 63  TM1829 TM1829 283682 Purified-2001-11-28
NEW_HUMAN_DOMAINS 6-27 -4.250 18  sp|O00341|EAA5_HUMAN Excitatory amino acid transporter 5 OS=Homo sapiens GN=SLC1A7 PE=2 SV=2 (Range: 476-560)
PDB0516 1-28 -17.500 74  1fct_A mol:protein length:32 FERREDOXIN CHLOROPLASTIC TRANSIT PEPTIDE SEQU
PfamA30U 4-26 -7.130 26  PF08377.8; F1MAQ5_RAT/374-1507; MAP2/Tau projection domain
SCOP206 9-34 -4.530 26  d2h3la2 b.36.1.1 (A:1314-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}
VFDB 18-29 -2.520 50  VFG000207(gi:15596909) (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
16 PF01257.17; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin 148 COG0516 1-148 -89.200 73  [C] KOG3196 NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit
H.sapiens 1-148 -89.500 65  sp|P19404|NDUV2_HUMAN(removed signalp:1-11) NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Homo sapiens GN=NDUFV2 PE=1 SV=2
HGM_OVER 44-144 -4.200 13  PB034180 _Gut.Meta.Jp.0112129_ gi|163310377|dbj|BABD01000320.1||2 (+ 509:1679~0 complete)
JCSG0516 1-148 -71.100 34  TM0012 TM0012 281893 Purified-2001-08-29
NEW_HUMAN_DOMAINS 54-123 -6.610 14  sp|Q8TER0|SNED1_HUMAN Sushi, nidogen and EGF-like domain-containing protein 1 OS=Homo sapiens GN=SNED1 PE=1 SV=2 (Range: 25-167)
PDB0516 1-148 -87.300 35  2fug_2 mol:protein length:181 NADH-quinone oxidoreductase chain 2
PfamA30U 71-147 -13.500 18  PF07845.9; K9UG38_9CHRO/7-125; Protein of unknown function (DUF1636 topsan)
SCOP206 1-148 -87.500 35  d3iam2_ c.47.1.21 (2:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
VFDB 9-148 -8.490 17  VFG002059(gi:15595271) (tagT) type six secretion associated protein TagT, ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
17 PF08975.8; B9JYZ4_AGRVS/31-145; Domain of unknown function (DUF1868 topsan) 115 COG0516 1-114 -24.000 54  [S] COG5255 Uncharacterized protein conserved in bacteria
H.sapiens 16-109 -10.700 17  sp|Q9P0M2|AKA7G_HUMAN A-kinase anchor protein 7 isoform gamma OS=Homo sapiens GN=AKAP7 PE=2 SV=1
HGM_OVER 16-84 -3.460 16  HGC00870 gi|163286116|dbj|BABD01024572.1|2.0 TMP01154;
JCSG0516 16-109 -5.480 17  TM1860 TM1860 283712 Purified-2001-02-15
NEW_HUMAN_DOMAINS 5-84 -8.010 17  sp|Q6ZVL6|CK041_HUMAN UPF0606 protein C11orf41 OS=Homo sapiens GN=C11orf41 PE=2 SV=2 (Range: 1688-1765)
PDB0516 1-114 -57.900 54  2fsq_A mol:protein length:243 Atu0111 protein
PfamA30U 16-115 -9.240 10  PF10469.7; A7UR96_ANOGA/136-349; AKAP7 2`5` RNA ligase-like domain
SCOP206 1-114 -57.100 54  d2fsqa1 d.61.1.4 (A:6-237) Putative phosphoesterase Atu0111 {Agrobacterium tumefaciens [TaxId: 358]}
VFDB 13-108 -4.580 VFG000304(gi:15645171) (cagD) type IV secretion system protein Cag24/CagD [Type IV secretion system (VF0060)] [Helicobacter pylori 26695]
18 PF03390.13; Q5WJJ9_BACSK/33-442; 2-hydroxycarboxylate transporter family 410 COG0516 1-410 -111.000 31  [C] COG3493 Na+/citrate symporter
H.sapiens 259-402 -6.410 11  sp|P35499|SCN4A_HUMAN Sodium channel protein type 4 subunit alpha OS=Homo sapiens GN=SCN4A PE=1 SV=4 (Range: 1-300)
HGM_OVER 334-410 -3.080 13  HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;
JCSG0516 180-245 -5.620 16  SP2485D NP_371294.1 413704 Crystal|NMR-2012-02-26
NEW_HUMAN_DOMAINS 360-398 -5.170 20  sp|Q8N412|CD037_HUMAN Uncharacterized protein C4orf37 OS=Homo sapiens GN=C4orf37 PE=2 SV=1 (Range: 1-62)
PDB0516 1-410 -112.000 31  5a1s_A mol:protein length:448 CITRATE-SODIUM SYMPORTER
PfamA30U 58-403 -11.700 13  PF05684.10; Q9FLW1_ARATH/79-442; Protein of unknown function (DUF819 topsan)
SCOP206 128-216 -4.680 18  d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
VFDB 36-305 -4.220 13  VFG000546(gi:16766191) (sipB/sspB) type III secretion system hydrophilic translocator, pore protein SipB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
19 PF03171.18; ACCO1_ARATH/158-259; 2OG-Fe(II) oxygenase superfamily 102 COG0516 3-102 -54.500 35  [QR] KOG0143 Iron/ascorbate family oxidoreductases
H.sapiens 15-102 -9.890 18  sp|O60568|PLOD3_HUMAN(removed signalp:1-24) Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Homo sapiens GN=PLOD3 PE=1 SV=1 (Range: 451-714)
HGM_OVER 15-95 -4.570 13  HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;
JCSG0516 1-102 -38.200 32  MI15887P NP_718175.1 398694 PDB-2010-08-27
NEW_HUMAN_DOMAINS 11-98 -6.540 17  sp|Q9UIU6|SIX4_HUMAN Homeobox protein SIX4 OS=Homo sapiens GN=SIX4 PE=1 SV=2 (Range: 356-505)
PDB0516 1-102 -66.700 62  1w9y_A mol:protein length:319 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 1
PfamA30U 16-102 -7.080 19  PF05995.10; Q1DDT5_MYXXD/3-167; Cysteine dioxygenase type I
SCOP206 1-102 -66.600 62  d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]}
VFDB 15-102 -5.730 12  VFG000556(gi:16766201) (invB) type III secretion system protein InvB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
20 PF13532.4; D0N998_PHYIT/73-283; 2OG-Fe(II) oxygenase superfamily 211 COG0516 1-211 -81.600 37  [A] KOG2731 DNA alkylation damage repair protein
H.sapiens 1-211 -59.900 20  sp|Q13686|ALKB1_HUMAN Alkylated DNA repair protein alkB homolog 1 OS=Homo sapiens GN=ALKBH1 PE=1 SV=2
HGM_OVER 51-211 -4.350 PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;
JCSG0516 1-211 -24.200 19  MA4241A XP_001471779.1 400140 Cloned-2009-03-24
NEW_HUMAN_DOMAINS 110-211 -5.340 sp|O75161|NPHP4_HUMAN Nephrocystin-4 OS=Homo sapiens GN=NPHP4 PE=1 SV=2 (Range: 954-1071)
PDB0516 1-211 -83.800 24  4nig_A mol:protein length:205 Alpha-ketoglutarate-dependent dioxygenase Alk
PfamA30U 110-195 -10.100 24  PF09859.7; Q98JN4_RHILO/75-246; Oxygenase, catalysing oxidative methylation of damaged DNA
SCOP206 1-211 -83.500 25  d4jhta_ b.82.2.10 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}
VFDB 1-211 -8.800 14  VFG045594(gi:52842900) (legD1) Dot/Icm type IV secretion system effector LegD1 [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.