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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 16082next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 PF10417.7; A4AVJ3_MARSH/157-196; C-terminal domain of 1-Cys peroxiredoxin 40 COG0516 1-32 -5.310 28  [O] KOG0852 Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes
2 PF12574.6; SCA4_RICPR/92-337; 120 KDa Rickettsia surface antigen 246 COG0516 1-176 -5.310 11  [S] COG5448 Uncharacterized conserved protein
3 PF09847.7; O29125_ARCFU/30-435; Membrane protein of 12 TMs 406 COG0516 1-404 -110.000 100  [R] COG3368 Predicted permease
4 PF00244.18; G1K9B0_ANOCA/9-229; 14-3-3 protein 221 COG0516 1-221 -132.000 81  [O] KOG0841 Multifunctional chaperone (14-3-3 family)
5 PF16998.3; W6RDF8_9RHIZ/37-150; 17 kDa outer membrane surface antigen 114 COG0516 2-110 -45.200 16  [M] COG4520 Surface antigen
6 PF00389.28; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 306 COG0516 1-306 -101.000 48  [HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases
7 PF02826.17; Q98GE4_RHILO/107-283; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 177 COG0516 1-177 -63.600 35  [K] KOG0067 Transcription factor CtBP
8 PF00198.21; A4ICH2_LEIIN/226-463; 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 238 COG0516 1-238 -98.300 44  [C] KOG0557 Dihydrolipoamide acetyltransferase
9 PF16078.3; H6C9R5_EXODN/72-112; 2-oxoglutarate dehydrogenase N-terminus 41 COG0516 1-41 -15.500 31  [C] COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes
10 PF04029.12; H1YDD2_9SPHI/8-231; 2-phosphosulpholactate phosphatase 224 COG0516 13-224 -86.100 32  [HR] COG2045 Phosphosulfolactate phosphohydrolase and related enzymes
11 PF16620.3; L5L3U3_PTEAL/250-410; Unstructured linker between I-set domains 2 and 3 on MYLCK 161 COG0516 1-159 -16.300 11  [Z] KOG3756 Pinin (desmosome-associated protein)
12 PF05635.9; K7WXD0_9NOST/8-110; 23S rRNA-intervening sequence protein 103 COG0516 27-64 -6.100 18  [V] COG1968 Uncharacterized bacitracin resistance protein
13 PF08521.8; B1Y781_LEPCP/20-172; Two-component sensor kinase N-terminal 153 COG0516 62-153 -5.910 14  [BK] KOG2535 RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase
14 PF08793.8; Q0E553_SFAVA/142-176; 2-cysteine adaptor domain 35 COG0516 1-29 -4.210 24  [S] COG4042 Predicted membrane protein
15 PF11591.6; D8UJ95_VOLCA/1-34; Ferredoxin chloroplastic transit peptide 34 COG0516 1-32 -3.430 18  [S] KOG4811 Uncharacterized conserved protein
16 PF01257.17; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin 148 COG0516 1-148 -89.200 73  [C] KOG3196 NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit
17 PF08975.8; B9JYZ4_AGRVS/31-145; Domain of unknown function (DUF1868 topsan) 115 COG0516 1-114 -24.000 54  [S] COG5255 Uncharacterized protein conserved in bacteria
18 PF03390.13; Q5WJJ9_BACSK/33-442; 2-hydroxycarboxylate transporter family 410 COG0516 1-410 -111.000 31  [C] COG3493 Na+/citrate symporter
19 PF03171.18; ACCO1_ARATH/158-259; 2OG-Fe(II) oxygenase superfamily 102 COG0516 3-102 -54.500 35  [QR] KOG0143 Iron/ascorbate family oxidoreductases
20 PF13532.4; D0N998_PHYIT/73-283; 2OG-Fe(II) oxygenase superfamily 211 COG0516 1-211 -81.600 37  [A] KOG2731 DNA alkylation damage repair protein


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.