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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 16079next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 PF10417.7; A4AVJ3_MARSH/157-196; C-terminal domain of 1-Cys peroxiredoxin 40 HGM_OVER 1-39 -1.210 10  PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;
2 PF12574.6; SCA4_RICPR/92-337; 120 KDa Rickettsia surface antigen 246 HGM_OVER 6-85 -5.630 13  HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397;
3 PF09847.7; O29125_ARCFU/30-435; Membrane protein of 12 TMs 406 HGM_OVER 66-121 -3.150 14  PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;
4 PF00244.18; G1K9B0_ANOCA/9-229; 14-3-3 protein 221 HGM_OVER 100-220 -3.870 13  PB017124 _Gut.Meta.Jp.0039711_ gi|162659581|dbj|BAAX01000024.1||2 (+ 385:1498~0 complete)
5 PF16998.3; W6RDF8_9RHIZ/37-150; 17 kDa outer membrane surface antigen 114 HGM_OVER 26-85 -4.450 19  PB002776 gi|157737147|ref|YP_001489830.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]gi|157699001|gb|ABV67161.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]
6 PF00389.28; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 306 HGM_OVER 29-145 -3.690 13  HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;
7 PF02826.17; Q98GE4_RHILO/107-283; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 177 HGM_OVER 22-177 -4.910 PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]
8 PF00198.21; A4ICH2_LEIIN/226-463; 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 238 HGM_OVER 56-176 -3.430 12  HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;
9 PF16078.3; H6C9R5_EXODN/72-112; 2-oxoglutarate dehydrogenase N-terminus 41 HGM_OVER 6-39 -2.190 14  PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]
10 PF04029.12; H1YDD2_9SPHI/8-231; 2-phosphosulpholactate phosphatase 224 HGM_OVER 69-133 -4.970 15  PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]
11 PF16620.3; L5L3U3_PTEAL/250-410; Unstructured linker between I-set domains 2 and 3 on MYLCK 161 HGM_OVER 1-80 -4.970 PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF
12 PF05635.9; K7WXD0_9NOST/8-110; 23S rRNA-intervening sequence protein 103 HGM_OVER 1-90 -3.900 12  PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;
13 PF08521.8; B1Y781_LEPCP/20-172; Two-component sensor kinase N-terminal 153 HGM_OVER 1-87 -5.750 10  PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;
14 PF08793.8; Q0E553_SFAVA/142-176; 2-cysteine adaptor domain 35 HGM_OVER 4-28 -2.350 16  PB092941 Q45777_BACTN/1-139 PB092941; Pfam-B_92941;
15 PF11591.6; D8UJ95_VOLCA/1-34; Ferredoxin chloroplastic transit peptide 34 HGM_OVER 1-33 -1.170 HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679;
16 PF01257.17; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin 148 HGM_OVER 44-144 -4.200 13  PB034180 _Gut.Meta.Jp.0112129_ gi|163310377|dbj|BABD01000320.1||2 (+ 509:1679~0 complete)
17 PF08975.8; B9JYZ4_AGRVS/31-145; Domain of unknown function (DUF1868 topsan) 115 HGM_OVER 16-84 -3.460 16  HGC00870 gi|163286116|dbj|BABD01024572.1|2.0 TMP01154;
18 PF03390.13; Q5WJJ9_BACSK/33-442; 2-hydroxycarboxylate transporter family 410 HGM_OVER 334-410 -3.080 13  HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;
19 PF03171.18; ACCO1_ARATH/158-259; 2OG-Fe(II) oxygenase superfamily 102 HGM_OVER 15-95 -4.570 13  HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;
20 PF13532.4; D0N998_PHYIT/73-283; 2OG-Fe(II) oxygenase superfamily 211 HGM_OVER 51-211 -4.350 PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.