current user: public

anford Burnham Prebys Medical Discovery Institute
Please be advised that due to the planned maintenance our websites might be temporarily unavailable on December 17-18, 2018. We apologise for the inconvenience that this may cause.

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 16082next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 PF10417.7; A4AVJ3_MARSH/157-196; C-terminal domain of 1-Cys peroxiredoxin 40 PfamA30U 8-40 -4.710 22  PF10371.7; R6XF60_9FIRM/623-679; Domain of unknown function
2 PF12574.6; SCA4_RICPR/92-337; 120 KDa Rickettsia surface antigen 246 PfamA30U 6-85 -7.240 PF12960.5; L0F7B8_DESDL/8-136; Protein of unknown function (DUF3849 topsan)
3 PF09847.7; O29125_ARCFU/30-435; Membrane protein of 12 TMs 406 PfamA30U 1-403 -23.100 13  PF16949.3; B4D3C0_9BACT/40-578; Putative ATP-binding cassette
4 PF00244.18; G1K9B0_ANOCA/9-229; 14-3-3 protein 221 PfamA30U 10-165 -16.500 18  PF05823.10; Q9XUB7_CAEEL/32-181; Nematode fatty acid retinoid binding protein (Gp-FAR-1)
5 PF16998.3; W6RDF8_9RHIZ/37-150; 17 kDa outer membrane surface antigen 114 PfamA30U 9-111 -34.100 12  PF16587.3; B8J263_DESDA/16-118; 17 kDa common-antigen outer membrane protein
6 PF00389.28; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 306 PfamA30U 100-274 -64.100 35  PF02826.17; Q98GE4_RHILO/107-283; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
7 PF02826.17; Q98GE4_RHILO/107-283; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 177 PfamA30U 1-177 -64.100 35  PF00389.28; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
8 PF00198.21; A4ICH2_LEIIN/226-463; 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 238 PfamA30U 4-227 -16.100 PF00302.16; B4ET40_PROMH/8-209; Chloramphenicol acetyltransferase
9 PF16078.3; H6C9R5_EXODN/72-112; 2-oxoglutarate dehydrogenase N-terminus 41 PfamA30U 12-41 -5.850 13  PF13286.4; A4G9P1_HERAR/283-375; Phosphohydrolase-associated domain
10 PF04029.12; H1YDD2_9SPHI/8-231; 2-phosphosulpholactate phosphatase 224 PfamA30U 79-175 -5.850 13  PF03313.13; K4KGR3_SIMAS/184-453; Serine dehydratase alpha chain
11 PF16620.3; L5L3U3_PTEAL/250-410; Unstructured linker between I-set domains 2 and 3 on MYLCK 161 PfamA30U 1-157 -22.100 12  PF05934.9; CLCC1_RAT/3-541; Mid-1-related chloride channel (MCLC)
38-136 -31.800 10  PF05887.9; PAR1_TRYBB/1-143; Procyclic acidic repetitive protein (PARP)
12 PF05635.9; K7WXD0_9NOST/8-110; 23S rRNA-intervening sequence protein 103 PfamA30U 2-56 -7.220 16  PF16180.3; H2QGK5_PANTR/18-103; RelB leucine zipper
13 PF08521.8; B1Y781_LEPCP/20-172; Two-component sensor kinase N-terminal 153 PfamA30U 1-89 -9.990 11  PF08918.8; H2IU53_RAHAC/9-187; PhoQ Sensor
14 PF08793.8; Q0E553_SFAVA/142-176; 2-cysteine adaptor domain 35 PfamA30U 3-18 -4.920 31  PF16646.3; G3PCY6_GASAC/4-71; Axin-1 tankyrase binding domain
15 PF11591.6; D8UJ95_VOLCA/1-34; Ferredoxin chloroplastic transit peptide 34 PfamA30U 4-26 -7.130 26  PF08377.8; F1MAQ5_RAT/374-1507; MAP2/Tau projection domain
16 PF01257.17; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin 148 PfamA30U 71-147 -13.500 18  PF07845.9; K9UG38_9CHRO/7-125; Protein of unknown function (DUF1636 topsan)
17 PF08975.8; B9JYZ4_AGRVS/31-145; Domain of unknown function (DUF1868 topsan) 115 PfamA30U 16-115 -9.240 10  PF10469.7; A7UR96_ANOGA/136-349; AKAP7 2`5` RNA ligase-like domain
18 PF03390.13; Q5WJJ9_BACSK/33-442; 2-hydroxycarboxylate transporter family 410 PfamA30U 58-403 -11.700 13  PF05684.10; Q9FLW1_ARATH/79-442; Protein of unknown function (DUF819 topsan)
19 PF03171.18; ACCO1_ARATH/158-259; 2OG-Fe(II) oxygenase superfamily 102 PfamA30U 16-102 -7.080 19  PF05995.10; Q1DDT5_MYXXD/3-167; Cysteine dioxygenase type I
20 PF13532.4; D0N998_PHYIT/73-283; 2OG-Fe(II) oxygenase superfamily 211 PfamA30U 110-195 -10.100 24  PF09859.7; Q98JN4_RHILO/75-246; Oxygenase, catalysing oxidative methylation of damaged DNA


FFAS is supported by the NIH grant R01-GM087218-01
1 2 0 3 0 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.