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anford Burnham Prebys Medical Discovery Institute
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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 2876next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15922991|ref|NP_370525.1| chromosomal replication initiation protein (SAV0001) [Staphylococcus aureus subsp. aureus Mu50] 453 COG0516 1-452 -134.000 37  [L] COG0593 ATPase involved in DNA replication initiation
2 gi|15922992|ref|NP_370526.1| DNA polymerase III subunit beta (SAV0002) [Staphylococcus aureus subsp. aureus Mu50] 377 COG0516 2-377 -90.200 25  [L] COG0592 DNA polymerase sliding clamp subunit (PCNA homolog)
3 gi|15922993|ref|NP_370527.1| hypothetical protein (SAV0003) [Staphylococcus aureus subsp. aureus Mu50] 81 COG0516 4-65 -42.200 43  [S] COG2501 Uncharacterized conserved protein
4 gi|15922994|ref|NP_370528.1| recombination protein F (SAV0004) [Staphylococcus aureus subsp. aureus Mu50] 370 COG0516 1-370 -108.000 23  [L] COG1195 Recombinational DNA repair ATPase (RecF pathway)
5 gi|15922995|ref|NP_370529.1| DNA gyrase subunit B (SAV0005) [Staphylococcus aureus subsp. aureus Mu50] 644 COG0516 7-644 -158.000 56  [L] COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
6 gi|15922996|ref|NP_370530.1| DNA gyrase subunit A (SAV0006) [Staphylococcus aureus subsp. aureus Mu50] 889 COG0516 5-834 -209.000 43  [L] COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
7 gi|15922997|ref|NP_370531.1| hypothetical protein (SAV0007) [Staphylococcus aureus subsp. aureus Mu50] 276 COG0516 9-276 -79.700 23  [G] KOG3974 Predicted sugar kinase
8 gi|161375866|ref|NP_370532.2| histidine ammonia-lyase (SAV0008) [Staphylococcus aureus subsp. aureus Mu50] 504 COG0516 2-503 -135.000 38  [E] COG2986 Histidine ammonia-lyase
9 gi|15922999|ref|NP_370533.1| seryl-tRNA synthetase (SAV0009) [Staphylococcus aureus subsp. aureus Mu50] 428 COG0516 1-424 -139.000 55  [J] COG0172 Seryl-tRNA synthetase
10 gi|15923000|ref|NP_370534.1| hypothetical protein (SAV0010) [Staphylococcus aureus subsp. aureus Mu50] 231 COG0516 2-221 -61.000 22  [E] COG1296 Predicted branched-chain amino acid permease (azaleucine resistance)
11 gi|15923001|ref|NP_370535.1|(removed signalp:1-29) hypothetical protein (SAV0011) [Staphylococcus aureus subsp. aureus Mu50] 80 COG0516 1-80 -45.100 16  [S] COG4392 Predicted membrane protein
12 gi|15923002|ref|NP_370536.1| putative homoserine-o-acetyltransferase (SAV0012) [Staphylococcus aureus subsp. aureus Mu50] 329 COG0516 4-325 -100.000 28  [E] COG2021 Homoserine acetyltransferase
13 gi|15923003|ref|NP_370537.1| hypothetical protein (SAV0013) [Staphylococcus aureus subsp. aureus Mu50] 331 COG0516 25-330 -87.500 19  [S] COG4241 Predicted membrane protein
14 gi|15923004|ref|NP_370538.1|(removed signalp:1-32) hypothetical protein (SAV0014) [Staphylococcus aureus subsp. aureus Mu50] 623 COG0516 2-623 -142.000 50  [T] COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain
15 gi|15923005|ref|NP_370539.1| 50S ribosomal protein L9 (SAV0015) [Staphylococcus aureus subsp. aureus Mu50] 148 COG0516 1-147 -72.400 32  [J] COG0359 Ribosomal protein L9
16 gi|15923006|ref|NP_370540.1| replicative DNA helicase (SAV0016) [Staphylococcus aureus subsp. aureus Mu50] 466 COG0516 2-464 -135.000 42  [L] COG0305 Replicative DNA helicase
17 gi|15923007|ref|NP_370541.1| adenylosuccinate synthetase (SAV0017) [Staphylococcus aureus subsp. aureus Mu50] 427 COG0516 1-427 -150.000 65  [F] COG0104 Adenylosuccinate synthase
18 gi|15923008|ref|NP_370542.1| response regulator (SAV0018) [Staphylococcus aureus subsp. aureus Mu50] 235 COG0516 3-231 -85.900 37  [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
19 gi|15923009|ref|NP_370543.1| two-component sensor histidine kinase (SAV0019) [Staphylococcus aureus subsp. aureus Mu50] 608 COG0516 1-608 -141.000 45  [T] COG5002 Signal transduction histidine kinase
20 gi|15923010|ref|NP_370544.1| hypothetical protein (SAV0020) [Staphylococcus aureus subsp. aureus Mu50] 453 COG0516 11-453 -105.000 16  [S] COG4863 Uncharacterized protein conserved in bacteria


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.