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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 2876next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15922991|ref|NP_370525.1| chromosomal replication initiation protein (SAV0001) [Staphylococcus aureus subsp. aureus Mu50] 453 PDB0516 6-452 -130.000 35  2z4r_A mol:protein length:440 Chromosomal replication initiator protein dna
2 gi|15922992|ref|NP_370526.1| DNA polymerase III subunit beta (SAV0002) [Staphylococcus aureus subsp. aureus Mu50] 377 PDB0516 2-377 -113.000 54  4tr6_A mol:protein length:380 DNA polymerase III subunit beta
3 gi|15922993|ref|NP_370527.1| hypothetical protein (SAV0003) [Staphylococcus aureus subsp. aureus Mu50] 81 PDB0516 7-70 -38.000 26  1p9k_A mol:protein length:79 orf, hypothetical protein
4 gi|15922994|ref|NP_370528.1| recombination protein F (SAV0004) [Staphylococcus aureus subsp. aureus Mu50] 370 PDB0516 1-370 -119.000 28  2o5v_A mol:protein length:359 DNA replication and repair protein recF
5 gi|15922995|ref|NP_370529.1| DNA gyrase subunit B (SAV0005) [Staphylococcus aureus subsp. aureus Mu50] 644 PDB0516 2-641 -193.000 51  4juo_C mol:protein length:670 DNA topoisomerase 4 subunit B
6 gi|15922996|ref|NP_370530.1| DNA gyrase subunit A (SAV0006) [Staphylococcus aureus subsp. aureus Mu50] 889 PDB0516 1-503 -146.000 69  4ddq_A mol:protein length:502 DNA gyrase subunit A
31-741 -126.000 37  1zvu_A mol:protein length:716 Topoisomerase IV subunit A
503-817 -67.800 35  3uc1_A mol:protein length:327 DNA gyrase subunit A
7 gi|15922997|ref|NP_370531.1| hypothetical protein (SAV0007) [Staphylococcus aureus subsp. aureus Mu50] 276 PDB0516 2-276 -99.600 45  2r3b_A mol:protein length:310 YjeF-related protein
8 gi|161375866|ref|NP_370532.2| histidine ammonia-lyase (SAV0008) [Staphylococcus aureus subsp. aureus Mu50] 504 PDB0516 2-503 -138.000 38  1b8f_A mol:protein length:509 Histidine ammonia-lyase
9 gi|15922999|ref|NP_370533.1| seryl-tRNA synthetase (SAV0009) [Staphylococcus aureus subsp. aureus Mu50] 428 PDB0516 1-419 -135.000 52  2dq3_A mol:protein length:425 Seryl-tRNA synthetase
10 gi|15923000|ref|NP_370534.1| hypothetical protein (SAV0010) [Staphylococcus aureus subsp. aureus Mu50] 231 PDB0516 25-97 -7.410 11  3cwb_G mol:protein length:81 MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTAS
11 gi|15923001|ref|NP_370535.1|(removed signalp:1-29) hypothetical protein (SAV0011) [Staphylococcus aureus subsp. aureus Mu50] 80 PDB0516 62-80 -5.930 10  2knc_A mol:protein length:54 Integrin alpha-IIb
12 gi|15923002|ref|NP_370536.1| putative homoserine-o-acetyltransferase (SAV0012) [Staphylococcus aureus subsp. aureus Mu50] 329 PDB0516 8-329 -132.000 99  4qlo_A mol:protein length:360 homoserine O-acetyltransferase
13 gi|15923003|ref|NP_370537.1| hypothetical protein (SAV0013) [Staphylococcus aureus subsp. aureus Mu50] 331 PDB0516 19-146 -8.760 14  3rlb_A mol:protein length:192 ThiT
14 gi|15923004|ref|NP_370538.1|(removed signalp:1-32) hypothetical protein (SAV0014) [Staphylococcus aureus subsp. aureus Mu50] 623 PDB0516 23-127 -28.400 29  2m1c_A mol:protein length:113 DHH subfamily 1 protein
122-268 -9.600 18  4zve_A mol:protein length:172 Diguanylate cyclase DosC
238-622 -11.200 12  2zxo_A mol:protein length:666 Single-stranded DNA specific exonuclease RecJ
281-623 -36.100 20  5cet_A mol:protein length:341 Bifunctional oligoribonuclease and PAP phosph
15 gi|15923005|ref|NP_370539.1| 50S ribosomal protein L9 (SAV0015) [Staphylococcus aureus subsp. aureus Mu50] 148 PDB0516 1-148 -85.900 59  1div_A mol:protein length:149 RIBOSOMAL PROTEIN L9
16 gi|15923006|ref|NP_370540.1| replicative DNA helicase (SAV0016) [Staphylococcus aureus subsp. aureus Mu50] 466 PDB0516 1-464 -144.000 59  2r6a_A mol:protein length:454 Replicative helicase
17 gi|15923007|ref|NP_370541.1| adenylosuccinate synthetase (SAV0017) [Staphylococcus aureus subsp. aureus Mu50] 427 PDB0516 1-427 -150.000 71  4m0g_A mol:protein length:432 Adenylosuccinate synthetase
18 gi|15923008|ref|NP_370542.1| response regulator (SAV0018) [Staphylococcus aureus subsp. aureus Mu50] 235 PDB0516 2-233 -115.000 46  2oqr_A mol:protein length:230 Sensory transduction protein regX3
19 gi|15923009|ref|NP_370543.1| two-component sensor histidine kinase (SAV0019) [Staphylococcus aureus subsp. aureus Mu50] 608 PDB0516 31-182 -28.200 97  4ywz_A mol:protein length:152 Sensor protein kinase WalK
119-255 -30.600 12  4gyc_B mol:protein length:135 Sensory rhodopsin II transducer
170-608 -110.000 39  4i5s_A mol:protein length:450 Putative histidine kinase CovS; VicK-like pro
20 gi|15923010|ref|NP_370544.1| hypothetical protein (SAV0020) [Staphylococcus aureus subsp. aureus Mu50] 453 PDB0516 49-453 -86.500 15  2fgt_A mol:protein length:417 Two-component system yycF/yycG regulatory pro


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.