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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 2876next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15922991|ref|NP_370525.1| chromosomal replication initiation protein (SAV0001) [Staphylococcus aureus subsp. aureus Mu50] 453 PfamA30U 4-67 -16.700 20  PF11638.6; DNAA_LAWIP/5-67; DnaA N-terminal domain
116-334 -107.000 64  PF00308.16; DNAA_STRCO/317-535; Bacterial dnaA protein
361-429 -37.100 69  PF08299.9; D9QS97_ACEAZ/358-426; Bacterial dnaA protein helix-turn-helix
2 gi|15922992|ref|NP_370526.1| DNA polymerase III subunit beta (SAV0002) [Staphylococcus aureus subsp. aureus Mu50] 377 PfamA30U 2-127 -36.600 27  PF00712.17; DPO3B_CAUCR/1-121; DNA polymerase III beta subunit, N-terminal domain
137-251 -48.100 29  PF02767.14; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain
253-375 -55.300 49  PF02768.13; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain
3 gi|15922993|ref|NP_370527.1| hypothetical protein (SAV0003) [Staphylococcus aureus subsp. aureus Mu50] 81 PfamA30U 8-70 -39.700 34  PF13275.4; D4IXS8_BUTFI/4-68; S4 domain
4 gi|15922994|ref|NP_370528.1| recombination protein F (SAV0004) [Staphylococcus aureus subsp. aureus Mu50] 370 PfamA30U 1-346 -20.700 14  PF13175.4; I1YS32_PREI7/1-378; AAA ATPase domain
5 gi|15922995|ref|NP_370529.1| DNA gyrase subunit B (SAV0005) [Staphylococcus aureus subsp. aureus Mu50] 644 PfamA30U 232-401 -85.200 44  PF00204.23; A9KS52_CLOPH/226-396; DNA gyrase B
542-643 -23.500 19  PF16898.3; K5XBZ3_PHACS/641-767; C-terminal associated domain of TOPRIM
575-634 -45.000 65  PF00986.19; M9X0E0_MANHA/738-800; DNA gyrase B subunit, carboxyl terminus
6 gi|15922996|ref|NP_370530.1| DNA gyrase subunit A (SAV0006) [Staphylococcus aureus subsp. aureus Mu50] 889 PfamA30U 33-473 -61.000 21  PF00521.18; A0A0D1DXS4_USTMA/785-1232; DNA gyrase/topoisomerase IV, subunit A
613-658 -15.300 50  PF03989.11; GYRA_HAEIN/641-686; DNA gyrase C-terminal domain, beta-propeller
7 gi|15922997|ref|NP_370531.1| hypothetical protein (SAV0007) [Staphylococcus aureus subsp. aureus Mu50] 276 PfamA30U 30-269 -80.700 29  PF01256.15; NNRD_BACSU/30-270; Carbohydrate kinase
8 gi|161375866|ref|NP_370532.2| histidine ammonia-lyase (SAV0008) [Staphylococcus aureus subsp. aureus Mu50] 504 PfamA30U 10-471 -130.000 38  PF00221.17; HUTH_IDILO/11-471; Aromatic amino acid lyase
9 gi|15922999|ref|NP_370533.1| seryl-tRNA synthetase (SAV0009) [Staphylococcus aureus subsp. aureus Mu50] 428 PfamA30U 1-107 -27.700 25  PF02403.20; C5WTV8_SORBI/1-114; Seryl-tRNA synthetase N-terminal domain
10 gi|15923000|ref|NP_370534.1| hypothetical protein (SAV0010) [Staphylococcus aureus subsp. aureus Mu50] 231 PfamA30U 16-156 -76.800 30  PF03591.12; I0I5R9_CALAS/20-162; AzlC protein
23-225 -10.900 12  PF05297.9; LMP1_EBVB9/1-386; Herpesvirus latent membrane protein 1 (LMP1)
11 gi|15923001|ref|NP_370535.1|(removed signalp:1-29) hypothetical protein (SAV0011) [Staphylococcus aureus subsp. aureus Mu50] 80 PfamA30U 1-76 -11.600 14  PF05437.10; Q8NTP7_CORGL/8-105; Branched-chain amino acid transport protein (AzlD)
12 gi|15923002|ref|NP_370536.1| putative homoserine-o-acetyltransferase (SAV0012) [Staphylococcus aureus subsp. aureus Mu50] 329 PfamA30U 31-324 -21.800 PF03096.12; NDRG2_HUMAN/40-318; Ndr family
13 gi|15923003|ref|NP_370537.1| hypothetical protein (SAV0013) [Staphylococcus aureus subsp. aureus Mu50] 331 PfamA30U 38-317 -75.600 23  PF09991.7; U5LGL3_9BACI/15-301; Predicted membrane protein (DUF2232 topsan)
14 gi|15923004|ref|NP_370538.1|(removed signalp:1-32) hypothetical protein (SAV0014) [Staphylococcus aureus subsp. aureus Mu50] 623 PfamA30U 127-268 -7.880 14  PF05165.10; GCH3_METTH/1-249; GTP cyclohydrolase III
15 gi|15923005|ref|NP_370539.1| 50S ribosomal protein L9 (SAV0015) [Staphylococcus aureus subsp. aureus Mu50] 148 PfamA30U 1-47 -31.600 57  PF01281.17; RL9_FERNB/1-47; Ribosomal protein L9, N-terminal domain
63-147 -46.700 34  PF03948.12; R7G1M1_9FIRM/63-146; Ribosomal protein L9, C-terminal domain
16 gi|15923006|ref|NP_370540.1| replicative DNA helicase (SAV0016) [Staphylococcus aureus subsp. aureus Mu50] 466 PfamA30U 9-111 -49.900 37  PF00772.19; Q1MZU6_9GAMM/10-112; DnaB-like helicase N terminal domain
185-457 -106.000 58  PF03796.13; M4NCG5_9GAMM/198-453; DnaB-like helicase C terminal domain
17 gi|15923007|ref|NP_370541.1| adenylosuccinate synthetase (SAV0017) [Staphylococcus aureus subsp. aureus Mu50] 427 PfamA30U 4-421 -138.000 40  PF00709.19; S3D6Z3_GLAL2/4-421; Adenylosuccinate synthetase
18 gi|15923008|ref|NP_370542.1| response regulator (SAV0018) [Staphylococcus aureus subsp. aureus Mu50] 235 PfamA30U 7-112 -54.500 25  PF00072.22; RSSB_ECOLI/10-121; Response regulator receiver domain
155-231 -34.100 31  PF00486.26; I0DPC2_PROSM/145-220; Transcriptional regulatory protein, C terminal
19 gi|15923009|ref|NP_370543.1| two-component sensor histidine kinase (SAV0019) [Staphylococcus aureus subsp. aureus Mu50] 608 PfamA30U 1-182 -13.500 13  PF10144.7; SMP_YERPE/1-162; Bacterial virulence factor haemolysin
184-250 -14.600 19  PF00672.23; P95626_RHILE/179-249; HAMP domain
265-367 -13.100 PF13596.4; C1CZ44_DEIDV/745-850; PAS domain
376-442 -22.000 29  PF00512.23; Q55783_SYNY3/185-253; His Kinase A (phospho-acceptor) domain
393-588 -14.700 12  PF10090.7; V5SF53_9RHIZ/32-212; Histidine phosphotransferase
486-598 -47.900 35  PF02518.24; O52937_9CYAN/626-739; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
20 gi|15923010|ref|NP_370544.1| hypothetical protein (SAV0020) [Staphylococcus aureus subsp. aureus Mu50] 453 PfamA30U 14-453 -94.700 21  PF07435.9; Q8YA70_LISMO/5-440; YycH protein


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.