current user: public

anford Burnham Prebys Medical Discovery Institute
Please be advised that due to the planned maintenance our websites might be temporarily unavailable on December 17-18, 2018. We apologise for the inconvenience that this may cause.

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4946next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16758994|ref|NP_454611.1| thr operon leader peptide (STY0001) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 21 PfamA30U 1-20 -3.150 25  PF12537.6; Q0UJI5_PHANO/200-267; The Golgi pH Regulator (GPHR) Family N-terminal
2 gi|16758995|ref|NP_454612.1| bifunctional aspartokinase I/homeserine dehydrogenase I (STY0002) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 820 PfamA30U 614-811 -29.700 28  PF00742.17; R5EAW4_9BURK/138-316; Homoserine dehydrogenase
3 gi|16758996|ref|NP_454613.1| homoserine kinase (STY0003) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 309 PfamA30U 83-150 -13.100 25  PF00288.24; ISPE_BACSU/86-144; GHMP kinases N terminal domain
4 gi|16758997|ref|NP_454614.1| threonine synthase (STY0004) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 428 PfamA30U 2-80 -35.800 31  PF14821.4; Q21LF7_SACD2/2-80; Threonine synthase N terminus
5 gi|16758998|ref|NP_454615.1| hypothetical protein (STY0005) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 257 PfamA30U 1-243 -124.000 58  PF03883.12; D4ZH13_SHEVD/1-244; Peroxide stress protein YaaA
6 gi|16758999|ref|NP_454616.1| putative amino-acid transport protein (STY0006) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 476 PfamA30U 47-453 -118.000 47  PF01235.15; C5DAE3_GEOSW/49-446; Sodium:alanine symporter family
7 gi|16759000|ref|NP_454617.1| transaldolase B (STY0007) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 317 PfamA30U 14-313 -144.000 58  PF00923.17; Q966C7_CAEEL/13-315; Transaldolase/Fructose-6-phosphate aldolase
8 gi|16759001|ref|NP_454618.1| molybdenum cofactor biosynthesis protein MogA (STY0008) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 196 PfamA30U 8-144 -17.200 21  PF00994.22; CINAL_DESPS/4-169; Probable molybdopterin binding domain
9 gi|16759002|ref|NP_454619.1| hypothetical protein (STY0009) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 188 PfamA30U 3-187 -88.900 31  PF01184.17; A7TND9_VANPO/71-277; GPR1/FUN34/yaaH family
10 gi|16759003|ref|NP_454620.1| hypothetical protein (STY0010) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 237 PfamA30U 5-38 -9.960 32  PF13099.4; E3D0J1_9BACT/3-37; Domain of unknown function (DUF3944 topsan)
11 gi|16759004|ref|NP_454621.1|(removed signalp:1-23) hypothetical protein (STY0011) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 111 PfamA30U 1-109 -53.600 78  PF10807.6; A6T4F3_KLEP7/3-132; Protein of unknown function (DUF2541 topsan)
12 gi|16759005|ref|NP_454622.1| molecular chaperone DnaK (STY0012) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 638 PfamA30U 4-604 -202.000 62  PF00012.18; HSP7E_DROME/54-653; Hsp70 protein
13 gi|16759006|ref|NP_454623.1| chaperone protein DnaJ (STY0013) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 379 PfamA30U 5-67 -39.200 55  PF00226.29; Q22028_CAEEL/17-79; DnaJ domain
120-333 -84.700 34  PF01556.16; T0NBZ6_9EURY/129-343; DnaJ C terminal domain
14 gi|16759007|ref|NP_454624.1| putative regulatory protein (STY0014) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 315 PfamA30U 16-70 -10.900 20  PF00126.25; Q8EIK0_SHEON/8-63; Bacterial regulatory helix-turn-helix protein, lysR family
15 gi|16759008|ref|NP_454625.1| hypothetical protein (STY0015) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 114 PfamA30U 5-107 -17.600 PF05106.10; A6VNP3_ACTSZ/5-105; Phage holin family (Lysis protein S)
16 gi|16759009|ref|NP_454626.1| hypothetical protein (STY0016) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 177 PfamA30U 5-88 -50.500 38  PF05838.10; S5YCL9_PARAH/8-97; Glycosyl hydrolase 108
91-176 -33.900 23  PF09374.8; Q8EDS2_SHEON/119-186; Predicted Peptidoglycan domain
17 gi|16759010|ref|NP_454627.1| hypothetical protein (STY0017) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 147 PfamA30U 25-102 -23.000 14  PF00486.26; I0DPC2_PROSM/145-220; Transcriptional regulatory protein, C terminal
18 gi|16759011|ref|NP_454628.1| putative chitinase (STY0018) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 699 PfamA30U 54-465 -94.000 27  PF00704.26; Q9WFU7_9ABAC/160-544; Glycosyl hydrolases family 18
651-693 -16.000 20  PF02839.12; Q2SNL2_HAHCH/28-71; Carbohydrate binding domain
19 gi|16759012|ref|NP_454629.1| hypothetical protein (STY0019) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 383 PfamA30U 331-381 -10.000 19  PF14686.4; A1CNA7_ASPCL/148-225; Polysaccharide lyase family 4, domain II
20 gi|16759013|ref|NP_454630.1| hypothetical protein (STY0020) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 620 PfamA30U 252-508 -10.200 10  PF01341.15; G2XB72_VERDV/142-445; Glycosyl hydrolases family 6


FFAS is supported by the NIH grant R01-GM087218-01
1 2 0 2 9 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.