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anford Burnham Prebys Medical Discovery Institute
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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4725next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16763391|ref|NP_459006.1| thr operon leader peptide (STM0001) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-21) 21 JCSG0516 1-21 -4.440 33  SP2008M YP_193100.1 411825 Purified-2010-09-29
2 gi|16763392|ref|NP_459007.1| bifunctional aspartokinase I/homoserine dehydrogenase I (STM0002) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-820) 820 JCSG0516 1-477 -87.000 19  MJ8463A YP_957443.1 403171 Crystal|NMR-2009-10-31
465-815 -44.400 22  FN12420A NP_978932.1 379029 Purified-2007-08-28
3 gi|16763393|ref|NP_459008.1| homoserine kinase (STM0003) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-309) 309 JCSG0516 2-307 -91.600 26  TM0545 TM0545 282418 Purified-2001-12-06
4 gi|16763394|ref|NP_459009.1| threonine synthase (STM0004) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-428) 428 JCSG0516 63-405 -21.900 23  TM0546 TM0546 282419 Purified-2001-10-17
5 gi|16763395|ref|NP_459010.1| hypothetical protein (STM0005) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-257) 257 JCSG0516 23-218 -6.410 14  PS05988 NP_519234.1 376593 Purified-2007-11-08
6 gi|16763396|ref|NP_459011.1| alanine/glycine transport protein (STM0006) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-476) 476 JCSG0516 16-428 -6.210 14  SP19117A NP_251051.1 413324 Selected-2009-11-12
7 gi|16763397|ref|NP_459012.1| transaldolase B (STM0007) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-317) 317 JCSG0516 1-317 -145.000 59  MA0295A 13435797 399843 Cloned-2009-01-23
8 gi|16763398|ref|NP_459013.1| molybdenum cofactor biosynthesis protein MogA (STM0008) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-196) 196 JCSG0516 1-142 -13.500 23  GE7651A YP_001088583.1 396890 Crystal|NMR-2009-07-18
9 gi|16763399|ref|NP_459014.1| hypothetical protein (STM0009) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-188) 188 JCSG0516 8-130 -7.300 14  TM1341 TM1341 283203 Purified-2001-12-19
10 gi|16763400|ref|NP_459015.1| hypothetical protein (STM0010) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-237) 237 JCSG0516 3-142 -8.080 15  MG8793B YP_413069.1 391079 Purified-2008-09-03
11 gi|16763401|ref|NP_459016.1|(removed signalp:1-23) hypothetical protein (STM0011) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 24-134) 111 JCSG0516 1-111 -55.100 80  GS13914A YP_001333704.1 384834 Purified-2010-04-01
12 gi|16763402|ref|NP_459017.1| molecular chaperone DnaK (STM0012) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-638) 638 JCSG0516 1-614 -191.000 52  TM0373 TM0373 282248 Purified-2001-03-14
13 gi|16763403|ref|NP_459018.1| chaperone protein DnaJ (STM0013) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-379) 379 JCSG0516 1-356 -128.000 40  TM0849 TM0849 282719 Selected-2001-10-12
14 gi|16763404|ref|NP_459019.1| transcriptional regulator (STM0014) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-315) 315 JCSG0516 4-315 -89.100 19  MJ15872A YP_269805.1 402763 Purified-2009-10-17
15 gi|16763405|ref|NP_459020.1| bacteriophage protein (STM0015) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-114) 114 JCSG0516 15-94 -9.580 24  TM0020 TM0020 281901 Purified-2001-08-24
16 gi|16763406|ref|NP_459021.1| hypothetical protein (STM0016) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-177) 177 JCSG0516 90-142 -8.430 20  CM7980A NPUN_22DEC03_CONTIG1_REVISED_GENENPR5246 368885 Crystal|NMR-2006-11-18
17 gi|16763407|ref|NP_459022.1| hypothetical protein (STM0017) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-147) 147 JCSG0516 1-138 -29.300 14  TT0126A NP_418557.1 403990 Purified-2009-11-06
18 gi|16763408|ref|NP_459023.1| exochitinase (STM0018) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-699) 699 JCSG0516 10-588 -14.600 10  SP16664C ZP_02071203.1 409191 Selected-2009-11-12
28-485 -48.800 17  GS13820A NP_810545.1 384117 Crystal|NMR-2009-01-09
19 gi|16763409|ref|NP_459024.1| hydroxymethyltransferase (STM0019) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-998) 998 JCSG0516 2-480 -10.500 EL17883F YP_012959.1 423525 Selected-2011-05-25
20 gi|16763410|ref|NP_459025.1| cytoplasmic protein (STM0020) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-234) 234 JCSG0516 9-228 -44.900 12  MG10881C DHAF_12NOV03_CONTIG1084_REVISED_GENE3186 390770 Crystal|NMR-2008-08-09


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.