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anford Burnham Prebys Medical Discovery Institute
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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4725next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16763391|ref|NP_459006.1| thr operon leader peptide (STM0001) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-21) 21 PDB0516 2-14 -3.030 38  2na6_A mol:protein length:28 Tumor necrosis factor receptor superfamily me
2 gi|16763392|ref|NP_459007.1| bifunctional aspartokinase I/homoserine dehydrogenase I (STM0002) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-820) 820 PDB0516 1-465 -110.000 35  3c1m_A mol:protein length:473 Probable aspartokinase
462-817 -98.300 31  1q7g_A mol:protein length:359 Homoserine dehydrogenase
3 gi|16763393|ref|NP_459008.1| homoserine kinase (STM0003) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-309) 309 PDB0516 1-309 -118.000 76  4rpf_A mol:protein length:310 Homoserine kinase
4 gi|16763394|ref|NP_459009.1| threonine synthase (STM0004) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-428) 428 PDB0516 1-428 -131.000 93  1vb3_A mol:protein length:428 Threonine synthase
5 gi|16763395|ref|NP_459010.1| hypothetical protein (STM0005) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-257) 257 PDB0516 1-257 -125.000 86  5caj_A mol:protein length:278 UPF0246 protein YaaA
6 gi|16763396|ref|NP_459011.1| alanine/glycine transport protein (STM0006) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-476) 476 PDB0516 52-432 -13.000 15  3gi8_C mol:protein length:444 Uncharacterized protein MJ0609
7 gi|16763397|ref|NP_459012.1| transaldolase B (STM0007) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-317) 317 PDB0516 1-317 -150.000 94  3cwn_A mol:protein length:337 Transaldolase B
8 gi|16763398|ref|NP_459013.1| molybdenum cofactor biosynthesis protein MogA (STM0008) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-196) 196 PDB0516 1-194 -102.000 90  1di6_A mol:protein length:195 MOLYBDENUM COFACTOR BIOSYNTHETIC ENZYME
9 gi|16763399|ref|NP_459014.1| hypothetical protein (STM0009) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-188) 188 PDB0516 14-123 -6.550 10  3pjs_K mol:protein length:166 Voltage-gated potassium channel
10 gi|16763400|ref|NP_459015.1| hypothetical protein (STM0010) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-237) 237 PDB0516 73-128 -7.840 20  1rm1_C mol:protein length:286 Transcription initiation factor IIA large cha
11 gi|16763401|ref|NP_459016.1|(removed signalp:1-23) hypothetical protein (STM0011) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 24-134) 111 PDB0516 36-111 -8.050 11  4za1_A mol:protein length:151 NosA
12 gi|16763402|ref|NP_459017.1| molecular chaperone DnaK (STM0012) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-638) 638 PDB0516 1-605 -211.000 97  2kho_A mol:protein length:605 Heat shock protein 70
1-638 -117.000 25  3d2e_A mol:protein length:675 Heat shock protein homolog SSE1
13 gi|16763403|ref|NP_459018.1| chaperone protein DnaJ (STM0013) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-379) 379 PDB0516 1-363 -83.900 40  3lz8_A mol:protein length:329 Putative chaperone DnaJ
14 gi|16763404|ref|NP_459019.1| transcriptional regulator (STM0014) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-315) 315 PDB0516 3-313 -88.800 19  1utb_A mol:protein length:315 LYSR-TYPE REGULATORY PROTEIN
15 gi|16763405|ref|NP_459020.1| bacteriophage protein (STM0015) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-114) 114 PDB0516 17-94 -9.060 16  5a40_A mol:protein length:128 PUTATIVE FLUORIDE ION TRANSPORTER CRCB
16 gi|16763406|ref|NP_459021.1| hypothetical protein (STM0016) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-177) 177 PDB0516 1-175 -82.600 34  2ikb_A mol:protein length:167 Hypothetical protein NMB1012
17 gi|16763407|ref|NP_459022.1| hypothetical protein (STM0017) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-147) 147 PDB0516 8-120 -22.400 15  2m1b_A mol:protein length:122 Transcriptional regulatory protein, C termina
24-105 -23.300 15  5dcl_A mol:protein length:243 PhoB family transcriptional regulator
18 gi|16763408|ref|NP_459023.1| exochitinase (STM0018) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-699) 699 PDB0516 2-509 -117.000 41  4dws_A mol:protein length:546 Chi2
28-689 -98.300 15  4txg_A mol:protein length:793 Chitinase
19 gi|16763409|ref|NP_459024.1| hydroxymethyltransferase (STM0019) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-998) 998 PDB0516 633-892 -8.340 14  1tml_A mol:protein length:286 ENDO-1,4-BETA-D-GLUCANASE
20 gi|16763410|ref|NP_459025.1| cytoplasmic protein (STM0020) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-234) 234 PDB0516 1-229 -46.700 14  3kcc_A mol:protein length:260 Catabolite gene activator
34-229 -48.700 14  2oz6_A mol:protein length:207 Virulence Factor Regulator


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.