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# Query Length Result vs. Range Score %id Covered by template(s)
1 d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]} 116 COG0516 1-115 -40.400 23  [R] COG2346 Truncated hemoglobins
H.sapiens 9-116 -7.470 19  sp|Q9NPG2|NGB_HUMAN Neuroglobin OS=Homo sapiens GN=NGB PE=1 SV=1
HGM_OVER 32-112 -4.040 10  PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;
JCSG0516 1-116 -6.890 FL11062B NP_149192.1 376317 Crystal|NMR-2007-06-08
NEW_HUMAN_DOMAINS 1-78 -6.100 10  tr|F8WCB3|F8WCB3_HUMAN Uncharacterized protein OS=Homo sapiens GN=STAG1 PE=4 SV=1 (Range: 73-161)
PDB0516 1-116 -70.500 100  1dlw_A mol:protein length:116 HEMOGLOBIN
PfamA30U 1-115 -42.100 23  PF01152.19; Q7CX73_AGRFC/7-127; Bacterial-like globin
SCOP206 1-115 -68.800 34  d2gkma_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]}
VFDB 10-116 -4.440 VFG045601(gi:52843069) (lpg2874) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
2 d2gkma_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]} 127 COG0516 4-127 -40.800 17  [R] COG2346 Truncated hemoglobins
H.sapiens 21-127 -7.270 17  sp|Q9NPG2|NGB_HUMAN Neuroglobin OS=Homo sapiens GN=NGB PE=1 SV=1
HGM_OVER 44-124 -3.990 11  PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;
JCSG0516 1-127 -6.960 FL11062B NP_149192.1 376317 Crystal|NMR-2007-06-08
NEW_HUMAN_DOMAINS 1-90 -6.600 12  tr|F8WCB3|F8WCB3_HUMAN Uncharacterized protein OS=Homo sapiens GN=STAG1 PE=4 SV=1 (Range: 73-161)
PDB0516 1-127 -71.400 99  2gl3_A mol:protein length:136 Hemoglobin-like protein HbN
PfamA30U 13-127 -41.600 18  PF01152.19; Q7CX73_AGRFC/7-127; Bacterial-like globin
SCOP206 13-127 -68.800 34  d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]}
VFDB 3-123 -4.340 14  VFG000808(gi:15804225) (espH) Type III secretion system effector EspH, RhoGEF Inhibitor [EspH (VF0197)] [Escherichia coli O157:H7 str. EDL933]
3 d2qrwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbO [TaxId: 1773]} 126 COG0516 1-125 -70.700 32  [R] COG2346 Truncated hemoglobins
H.sapiens 7-124 -6.900 13  sp|Q96BM9|ARL8A_HUMAN ADP-ribosylation factor-like protein 8A OS=Homo sapiens GN=ARL8A PE=1 SV=1
HGM_OVER 10-125 -5.470 12  PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;
JCSG0516 13-98 -8.490 18  TM0603 TM0603 282476 PDB-2004-09-16
NEW_HUMAN_DOMAINS 11-126 -7.070 16  sp|Q86UQ4|ABCAD_HUMAN ATP-binding cassette sub-family A member 13 OS=Homo sapiens GN=ABCA13 PE=2 SV=3 (Range: 111-312)
PDB0516 1-126 -88.000 99  1ngk_A mol:protein length:128 Hemoglobin-like protein HbO
PfamA30U 2-123 -72.700 33  PF01152.19; Q7CX73_AGRFC/7-127; Bacterial-like globin
SCOP206 1-125 -79.500 38  d2bkma_ a.1.1.1 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}
VFDB 57-119 -4.790 17  VFG042070(gi:33593233) (btrU/bspR) Bordetella Bsc type III secretion system secreted regulator [T3SS (SS038)] [Bordetella pertussis Tohama I]
4 d2bkma_ a.1.1.1 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]} 128 COG0516 1-127 -78.500 42  [R] COG2346 Truncated hemoglobins
H.sapiens 15-123 -7.730 16  sp|O95486|SC24A_HUMAN Protein transport protein Sec24A OS=Homo sapiens GN=SEC24A PE=1 SV=2 (Range: 751-1050)
HGM_OVER 2-122 -5.880 14  PB044572 Q8A533_BACTN/1-343 PB044572; Pfam-B_44572;
JCSG0516 16-126 -7.360 11  TM0603 TM0603 282476 PDB-2004-09-16
NEW_HUMAN_DOMAINS 20-97 -6.540 18  sp|Q8WU58|CQ063_HUMAN Uncharacterized protein C17orf63 OS=Homo sapiens GN=C17orf63 PE=1 SV=1 (Range: 45-110)
PDB0516 1-128 -90.200 100  2bkm_A mol:protein length:128 TRUNCATED HEMOGLOBIN FROM GEOBACILLUS STEAROT
PfamA30U 5-122 -79.800 45  PF01152.19; Q7CX73_AGRFC/7-127; Bacterial-like globin
SCOP206 4-124 -79.500 38  d2qrwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbO [TaxId: 1773]}
VFDB 11-126 -4.860 14  VFG000160(gi:15597593) (pvdE) pyoverdine biosynthesis protein PvdE [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1]
5 d4i0va_ a.1.1.1 (A:) automated matches {Synechococcus sp. [TaxId: 32049]} 123 COG0516 1-117 -34.900 17  [R] COG2346 Truncated hemoglobins
H.sapiens 13-122 -7.140 18  sp|Q9UPP2|IQEC3_HUMAN IQ motif and SEC7 domain-containing protein 3 OS=Homo sapiens GN=IQSEC3 PE=2 SV=3 (Range: 751-1050)
HGM_OVER 33-118 -3.700 PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;
JCSG0516 2-123 -6.170 13  SP17774A ZP_02421418.1 411235 Selected-2009-11-12
NEW_HUMAN_DOMAINS 3-123 -5.240 13  sp|Q9Y2D4|EXC6B_HUMAN Exocyst complex component 6B OS=Homo sapiens GN=EXOC6B PE=1 SV=3 (Range: 287-418)
PDB0516 1-123 -75.400 100  2ksc_A mol:protein length:123 Cyanoglobin
PfamA30U 2-117 -36.300 17  PF01152.19; Q7CX73_AGRFC/7-127; Bacterial-like globin
SCOP206 2-122 -63.900 32  d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]}
VFDB 20-120 -5.890 VFG045565(gi:52842561) (mavF) Dot/Icm type IV secretion system effector MavF [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
6 d1asha_ a.1.1.2 (A:) Ascaris hemoglobin, domain 1 {Pig roundworm (Ascaris suum) [TaxId: 6253]} 147 COG0516 1-145 -38.000 12  [C] COG1017 Hemoglobin-like flavoprotein
H.sapiens 1-147 -50.200 17  sp|Q9NPG2|NGB_HUMAN Neuroglobin OS=Homo sapiens GN=NGB PE=1 SV=1
HGM_OVER 1-65 -6.170 14  PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
JCSG0516 1-143 -7.930 13  PK9814B YP_413382.1 389379 Crystal|NMR-2008-06-26
NEW_HUMAN_DOMAINS 42-96 -7.670 12  tr|F5H085|F5H085_HUMAN Uncharacterized protein OS=Homo sapiens GN=CABIN1 PE=4 SV=1 (Range: 1-89)
PDB0516 1-147 -67.000 100  1ash_A mol:protein length:150 HEMOGLOBIN (OXY)
PfamA30U 4-117 -38.000 13  PF00042.20; GLB8_CHITH/9-115; Globin
SCOP206 1-147 -59.700 40  d2wtga_ a.1.1.0 (A:) automated matches {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
VFDB 1-133 -7.420 VFG000272(gi:15644700) (ureE) urease accessory protein (ureE) [Urease (VF0050)] [Helicobacter pylori 26695]
7 d2dc3a_ a.1.1.2 (A:) Cytoglobin {Human (Homo sapiens) [TaxId: 9606]} 172 COG0516 2-74 -32.100 19  [C] KOG3378 Globins and related hemoproteins
3-153 -23.500 16  [C] COG1017 Hemoglobin-like flavoprotein
H.sapiens 2-172 -76.400 100  sp|Q8WWM9|CYGB_HUMAN Cytoglobin OS=Homo sapiens GN=CYGB PE=1 SV=1
HGM_OVER 1-59 -5.880 10  PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
JCSG0516 4-144 -7.980 PK9814B YP_413382.1 389379 Crystal|NMR-2008-06-26
NEW_HUMAN_DOMAINS 40-167 -5.900 10  sp|Q13315|ATM_HUMAN Serine-protein kinase ATM OS=Homo sapiens GN=ATM PE=1 SV=3 (Range: 166-365)
PDB0516 2-172 -75.800 98  1umo_A mol:protein length:190 CYTOGLOBIN
PfamA30U 2-154 -10.500 17  PF11563.6; F0XJU9_GROCL/20-199; Protoglobin
7-116 -38.400 17  PF00042.20; GLB8_CHITH/9-115; Globin
SCOP206 3-157 -70.100 30  d1naza_ a.1.1.2 (A:) Myoglobin {Sperm whale (Physeter catodon) [TaxId: 9755]}
VFDB 17-151 -5.890 11  VFG002055(gi:82778259) (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
8 d4hsxa_ a.1.1.2 (A:) Dehaloperoxidase {Amphitrite ornata [TaxId: 129555]} 137 COG0516 1-64 -29.000 10  [C] KOG3378 Globins and related hemoproteins
2-137 -28.200 12  [C] COG1017 Hemoglobin-like flavoprotein
H.sapiens 2-137 -48.400 15  sp|Q9NPG2|NGB_HUMAN Neuroglobin OS=Homo sapiens GN=NGB PE=1 SV=1
HGM_OVER 30-137 -4.700 PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]
JCSG0516 24-119 -6.770 12  RF20619A.CABIN1 BC054497 421217 Purified-2010-12-07
NEW_HUMAN_DOMAINS 32-86 -7.930 18  tr|F5H085|F5H085_HUMAN Uncharacterized protein OS=Homo sapiens GN=CABIN1 PE=4 SV=1 (Range: 1-89)
PDB0516 1-137 -63.300 100  4hsw_A mol:protein length:137 Dehaloperoxidase A
PfamA30U 1-105 -41.600 23  PF00042.20; GLB8_CHITH/9-115; Globin
1-137 -9.640 PF11563.6; F0XJU9_GROCL/20-199; Protoglobin
SCOP206 1-136 -57.000 16  d1mbaa_ a.1.1.2 (A:) Myoglobin {Slug sea hare (Aplysia limacina) [TaxId: 6502]}
VFDB 1-137 -5.040 VFG000985(gi:31983586) (ipaD) type III secretion system hydrophilic translocator, needle tip protein IpaD [TTSS (VF0118)] [Shigella flexneri 2a str. 301]
9 d1ecaa_ a.1.1.2 (A:) Erythrocruorin {Midge (Chironomus thummi thummi), fraction III [TaxId: 7154]} 136 COG0516 1-134 -30.400 16  [C] COG1017 Hemoglobin-like flavoprotein
H.sapiens 1-135 -50.800 20  sp|P02144|MYG_HUMAN Myoglobin OS=Homo sapiens GN=MB PE=1 SV=2
HGM_OVER 22-84 -4.890 11  PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]
JCSG0516 1-136 -7.510 11  KN.B21273A.PROX1 BC024201 429645 Purified-2014-04-10
NEW_HUMAN_DOMAINS 1-83 -7.320 12  sp|O14939|PLD2_HUMAN Phospholipase D2 OS=Homo sapiens GN=PLD2 PE=1 SV=2 (Range: 831-933)
PDB0516 1-136 -65.500 100  1eca_A mol:protein length:136 ERYTHROCRUORIN (AQUO MET)
PfamA30U 1-134 -10.700 10  PF11563.6; F0XJU9_GROCL/20-199; Protoglobin
5-105 -46.600 50  PF00042.20; GLB8_CHITH/9-115; Globin
SCOP206 1-136 -56.200 24  d1mbaa_ a.1.1.2 (A:) Myoglobin {Slug sea hare (Aplysia limacina) [TaxId: 6502]}
VFDB 54-136 -4.850 11  VFG041281(gi:52841721) (lem9) Dot/Icm type IV secretion system effector Lem9 [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
10 d1x9fd_ a.1.1.2 (D:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit D1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} 140 COG0516 2-139 -40.800 16  [C] COG1017 Hemoglobin-like flavoprotein
H.sapiens 2-140 -53.400 21  sp|Q9NPG2|NGB_HUMAN Neuroglobin OS=Homo sapiens GN=NGB PE=1 SV=1
HGM_OVER 1-48 -4.320 10  PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
JCSG0516 3-137 -8.030 16  PG9814B NP_284435.1 372229 Purified-2006-12-13
NEW_HUMAN_DOMAINS 6-140 -7.610 13  sp|Q9Y6D6|BIG1_HUMAN Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Homo sapiens GN=ARFGEF1 PE=1 SV=2 (Range: 1377-1540)
PDB0516 1-140 -67.400 100  1x9f_D mol:protein length:140 hemoglobin chain d1
PfamA30U 6-112 -36.200 19  PF00042.20; GLB8_CHITH/9-115; Globin
SCOP206 1-140 -62.200 36  d2zs0b_ a.1.1.0 (B:) automated matches {Oligobrachia mashikoi [TaxId: 55676]}
VFDB 32-140 -6.080 10  VFG010471(gi:52841164) (pilO) type IV pilus inner membrane platform protein PilO [type IV pili (AI111)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
11 d1x9fc_ a.1.1.2 (C:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C) {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} 149 COG0516 4-147 -25.200 12  [C] COG1017 Hemoglobin-like flavoprotein
5-77 -27.900 12  [C] KOG3378 Globins and related hemoproteins
H.sapiens 5-149 -50.400 18  sp|Q8WWM9|CYGB_HUMAN Cytoglobin OS=Homo sapiens GN=CYGB PE=1 SV=1
HGM_OVER 6-137 -4.800 PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;
JCSG0516 6-143 -7.720 12  PK9814B YP_413382.1 389379 Crystal|NMR-2008-06-26
NEW_HUMAN_DOMAINS 38-146 -7.340 14  sp|P21359|NF1_HUMAN Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2 (Range: 491-632)
PDB0516 1-149 -67.700 71  4u8u_C mol:protein length:151 Globin c Chain
PfamA30U 9-119 -37.500 22  PF00042.20; GLB8_CHITH/9-115; Globin
SCOP206 2-149 -62.700 34  d2zs0c_ a.1.1.0 (C:) automated matches {Oligobrachia mashikoi [TaxId: 55676]}
VFDB 3-145 -6.460 VFG002080(gi:15600883) (vasC) type VI secretion system protein VasC [T6SS (VF0335)] [Vibrio cholerae O1 biovar El Tor str. N16961]
12 d1cqxa1 a.1.1.2 (A:1-150) Flavohemoglobin, N-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} 150 COG0516 1-150 -91.700 45  [C] COG1017 Hemoglobin-like flavoprotein
H.sapiens 2-139 -56.600 23  sp|Q9NPG2|NGB_HUMAN Neuroglobin OS=Homo sapiens GN=NGB PE=1 SV=1
HGM_OVER 12-140 -4.280 11  PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;
JCSG0516 28-146 -8.210 12  TB5252A 13815007 358088 Purified-2004-07-15
NEW_HUMAN_DOMAINS 6-133 -6.630 10  sp|Q5TH69|BIG3_HUMAN Brefeldin A-inhibited guanine nucleotide-exchange protein 3 OS=Homo sapiens GN=ARFGEF3 PE=1 SV=3 (Range: 1440-1626)
PDB0516 1-146 -94.800 50  1vhb_A mol:protein length:146 HEMOGLOBIN
PfamA30U 2-147 -14.000 13  PF11563.6; F0XJU9_GROCL/20-199; Protoglobin
6-103 -19.700 16  PF00042.20; GLB8_CHITH/9-115; Globin
SCOP206 3-143 -88.000 39  d2wy4a_ a.1.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}
VFDB 2-138 -5.550 14  VFG000700(gi:30962648) (bsc1) bifunctional; ribulose 5-phosphate reductase; CDP-ribitol pyrophosphorylase [Capsule (VF0043)] [Haemophilus influenzae str. 1007]
13 d1jl7a_ a.1.1.2 (A:) Glycera globin {Marine bloodworm (Glycera dibranchiata) [TaxId: 6350]} 147 COG0516 2-147 -56.300 18  [C] COG1017 Hemoglobin-like flavoprotein
H.sapiens 2-147 -61.200 20  sp|Q9NPG2|NGB_HUMAN Neuroglobin OS=Homo sapiens GN=NGB PE=1 SV=1
HGM_OVER 3-80 -4.670 11  PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
JCSG0516 12-128 -6.210 FM12207A YP_001813159.1 377609 PDB-2008-01-22
NEW_HUMAN_DOMAINS 41-138 -6.680 11  sp|Q5UIP0|RIF1_HUMAN Telomere-associated protein RIF1 OS=Homo sapiens GN=RIF1 PE=1 SV=2 (Range: 406-772)
PDB0516 1-147 -76.000 100  1jf3_A mol:protein length:147 monomer hemoglobin component III
PfamA30U 1-143 -10.600 14  PF11563.6; F0XJU9_GROCL/20-199; Protoglobin
6-111 -27.600 18  PF00042.20; GLB8_CHITH/9-115; Globin
SCOP206 2-143 -61.600 19  d3ubca_ a.1.1.0 (A:) automated matches {Methylacidiphilum infernorum [TaxId: 481448]}
VFDB 45-147 -5.770 10  VFG045530(gi:52841882) (lpg1654) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
14 d1it2a_ a.1.1.2 (A:) Hagfish hemoglobin {Inshore hagfish (Eptatretus burgeri) [TaxId: 7764]} 146 COG0516 5-80 -34.300 22  [C] KOG3378 Globins and related hemoproteins
11-142 -20.400 11  [C] COG1017 Hemoglobin-like flavoprotein
H.sapiens 8-146 -63.000 22  sp|P68871|HBB_HUMAN Hemoglobin subunit beta OS=Homo sapiens GN=HBB PE=1 SV=2
HGM_OVER 12-71 -5.510 PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
JCSG0516 12-133 -7.990 11  PK9814B YP_413382.1 389379 Crystal|NMR-2008-06-26
NEW_HUMAN_DOMAINS 7-90 -5.820 14  sp|Q8NI27|THOC2_HUMAN THO complex subunit 2 OS=Homo sapiens GN=THOC2 PE=1 SV=2 (Range: 431-567)
PDB0516 1-146 -79.800 100  1it2_A mol:protein length:146 hemoglobin
PfamA30U 7-146 -9.950 13  PF11563.6; F0XJU9_GROCL/20-199; Protoglobin
15-122 -39.700 20  PF00042.20; GLB8_CHITH/9-115; Globin
SCOP206 9-146 -63.200 18  d1naza_ a.1.1.2 (A:) Myoglobin {Sperm whale (Physeter catodon) [TaxId: 9755]}
VFDB 5-114 -6.160 14  VFG041308(gi:52842183) (pieD/lirF) Dot/Icm type IV secretion system effector PieD/LirF [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
15 d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT, sensor domain {Bacillus subtilis [TaxId: 1423]} 169 COG0516 34-160 -15.800 16  [C] COG1017 Hemoglobin-like flavoprotein
H.sapiens 34-169 -13.200 sp|Q9NPG2|NGB_HUMAN Neuroglobin OS=Homo sapiens GN=NGB PE=1 SV=1
HGM_OVER 30-139 -3.350 11  HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;
JCSG0516 1-165 -6.730 SP16541B ZP_02066110.1 408077 PDB-2011-11-22
NEW_HUMAN_DOMAINS 18-139 -6.420 10  sp|A8MV24|CQ098_HUMAN Uncharacterized protein C17orf98 OS=Homo sapiens GN=C17orf98 PE=4 SV=1 (Range: 1-154)
PDB0516 1-169 -74.300 100  1or4_A mol:protein length:178 Heme-based aerotactic transducer hemAT
PfamA30U 22-169 -54.700 11  PF11563.6; F0XJU9_GROCL/20-199; Protoglobin
SCOP206 34-169 -16.400 13  d3wfwa1 a.1.1.0 (A:1-133) automated matches {Methylacidiphilum infernorum [TaxId: 481448]}
VFDB 42-169 -5.360 VFG000386(gi:16082724) (yscX) type III secretion system protein YscX [TTSS (VF0140)] [Yersinia pestis CO92]
16 d1itha_ a.1.1.2 (A:) Hemoglobin {Innkeeper worm (Urechis caupo) [TaxId: 6431]} 141 COG0516 1-73 -33.400 12  [C] KOG3378 Globins and related hemoproteins
2-140 -25.400 16  [C] COG1017 Hemoglobin-like flavoprotein
H.sapiens 1-141 -51.100 17  sp|P02144|MYG_HUMAN Myoglobin OS=Homo sapiens GN=MB PE=1 SV=2
HGM_OVER 3-64 -5.450 10  PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
JCSG0516 3-138 -8.350 PG9814B NP_284435.1 372229 Purified-2006-12-13
NEW_HUMAN_DOMAINS 2-101 -6.510 10  sp|Q5JWR5|DOP1_HUMAN Protein dopey-1 OS=Homo sapiens GN=DOPEY1 PE=1 SV=1 (Range: 1377-1531)
PDB0516 1-141 -70.100 100  1ith_A mol:protein length:141 HEMOGLOBIN (CYANO MET)
PfamA30U 1-137 -10.500 10  PF11563.6; F0XJU9_GROCL/20-199; Protoglobin
6-112 -44.100 16  PF00042.20; GLB8_CHITH/9-115; Globin
SCOP206 1-141 -59.800 16  d1mbaa_ a.1.1.2 (A:) Myoglobin {Slug sea hare (Aplysia limacina) [TaxId: 6502]}
VFDB 2-111 -6.160 14  VFG000053(gi:33593249) (bcr4) Bordetella Bsc type III secretion system protein Bcr4 [TTSS (VF0035)] [Bordetella pertussis Tohama I]
17 d3g46a_ a.1.1.2 (A:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]} 146 COG0516 1-78 -34.500 19  [C] KOG3378 Globins and related hemoproteins
10-146 -27.500 17  [C] COG1017 Hemoglobin-like flavoprotein
H.sapiens 1-146 -55.100 21  sp|Q8WWM9|CYGB_HUMAN Cytoglobin OS=Homo sapiens GN=CYGB PE=1 SV=1
HGM_OVER 1-63 -6.530 PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
JCSG0516 11-145 -8.570 10  PG9814B NP_284435.1 372229 Purified-2006-12-13
NEW_HUMAN_DOMAINS 37-146 -6.400 13  sp|P21359|NF1_HUMAN Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2 (Range: 491-632)
PDB0516 1-146 -69.100 99  3uhi_A mol:protein length:146 Globin-1
PfamA30U 8-146 -10.200 10  PF11563.6; F0XJU9_GROCL/20-199; Protoglobin
14-119 -40.500 17  PF00042.20; GLB8_CHITH/9-115; Globin
SCOP206 9-146 -58.100 22  d1mbaa_ a.1.1.2 (A:) Myoglobin {Slug sea hare (Aplysia limacina) [TaxId: 6502]}
VFDB 37-145 -5.710 VFG010471(gi:52841164) (pilO) type IV pilus inner membrane platform protein PilO [type IV pili (AI111)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
18 d1b0ba_ a.1.1.2 (A:) Hemoglobin I {Clam (Lucina pectinata) [TaxId: 244486]} 142 COG0516 2-140 -39.600 15  [C] COG1017 Hemoglobin-like flavoprotein
H.sapiens 2-141 -56.900 17  sp|Q9NPG2|NGB_HUMAN Neuroglobin OS=Homo sapiens GN=NGB PE=1 SV=1
HGM_OVER 3-58 -4.780 PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
JCSG0516 3-137 -8.700 11  PG9814B NP_284435.1 372229 Purified-2006-12-13
NEW_HUMAN_DOMAINS 6-140 -9.550 sp|Q8IX21|F178A_HUMAN Protein FAM178A OS=Homo sapiens GN=FAM178A PE=1 SV=2 (Range: 727-883)
PDB0516 1-142 -67.800 100  1b0b_A mol:protein length:142 HEMOGLOBIN
PfamA30U 1-140 -12.500 12  PF11563.6; F0XJU9_GROCL/20-199; Protoglobin
6-114 -40.900 29  PF00042.20; GLB8_CHITH/9-115; Globin
SCOP206 1-142 -59.600 30  d3pt8a_ a.1.1.0 (A:) automated matches {Clam (Lucina pectinata) [TaxId: 244486]}
VFDB 53-142 -5.230 12  VFG041281(gi:52841721) (lem9) Dot/Icm type IV secretion system effector Lem9 [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
19 d1gcva_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Houndshark (Mustelus griseus) [TaxId: 89020]} 140 COG0516 1-67 -27.800 16  [C] KOG3378 Globins and related hemoproteins
2-138 -21.100 15  [C] COG1017 Hemoglobin-like flavoprotein
H.sapiens 1-140 -82.500 36  sp|P09105|HBAT_HUMAN Hemoglobin subunit theta-1 OS=Homo sapiens GN=HBQ1 PE=1 SV=2
HGM_OVER 3-76 -5.040 PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
JCSG0516 33-125 -7.520 13  MJ10001K YP_001084108.1 402146 Purified-2009-11-14
NEW_HUMAN_DOMAINS 10-67 -6.150 13  sp|Q9ULL1|PKHG1_HUMAN Pleckstrin homology domain-containing family G member 1 OS=Homo sapiens GN=PLEKHG1 PE=1 SV=2 (Range: 834-944)
PDB0516 1-140 -88.000 100  1gcv_A mol:protein length:140 HEMOGLOBIN
PfamA30U 6-106 -36.100 13  PF00042.20; GLB8_CHITH/9-115; Globin
SCOP206 2-140 -77.500 38  d2w72a_ a.1.1.2 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 26-133 -5.570 12  VFG000441(gi:17233493) (spvR) Salmonella plasmid virulence: regulation of spv operon, lysR family [Spv (VF0107)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
20 d3d1kb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]} 146 COG0516 1-72 -28.000 16  [C] KOG3378 Globins and related hemoproteins
3-141 -15.400 10  [C] COG1017 Hemoglobin-like flavoprotein
H.sapiens 1-146 -85.600 43  sp|P68871|HBB_HUMAN Hemoglobin subunit beta OS=Homo sapiens GN=HBB PE=1 SV=2
HGM_OVER 4-57 -5.410 13  PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
JCSG0516 27-135 -6.540 12  SP7807AE YP_001297902.1 409826 Selected-2009-11-12
NEW_HUMAN_DOMAINS 24-115 -6.270 20  sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4 PE=1 SV=1 (Range: 238-347)
PDB0516 1-146 -86.400 67  1v4u_B mol:protein length:146 hemoglobin beta chain
PfamA30U 7-111 -37.100 12  PF00042.20; GLB8_CHITH/9-115; Globin
SCOP206 1-146 -76.200 40  d1gcvb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Houndshark (Mustelus griseus) [TaxId: 89020]}
VFDB 13-120 -4.890 VFG000441(gi:17233493) (spvR) Salmonella plasmid virulence: regulation of spv operon, lysR family [Spv (VF0107)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.