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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 13760next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]} 116 COG0516 1-115 -40.400 23  [R] COG2346 Truncated hemoglobins
2 d2gkma_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]} 127 COG0516 4-127 -40.800 17  [R] COG2346 Truncated hemoglobins
3 d2qrwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbO [TaxId: 1773]} 126 COG0516 1-125 -70.700 32  [R] COG2346 Truncated hemoglobins
4 d2bkma_ a.1.1.1 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]} 128 COG0516 1-127 -78.500 42  [R] COG2346 Truncated hemoglobins
5 d4i0va_ a.1.1.1 (A:) automated matches {Synechococcus sp. [TaxId: 32049]} 123 COG0516 1-117 -34.900 17  [R] COG2346 Truncated hemoglobins
6 d1asha_ a.1.1.2 (A:) Ascaris hemoglobin, domain 1 {Pig roundworm (Ascaris suum) [TaxId: 6253]} 147 COG0516 1-145 -38.000 12  [C] COG1017 Hemoglobin-like flavoprotein
7 d2dc3a_ a.1.1.2 (A:) Cytoglobin {Human (Homo sapiens) [TaxId: 9606]} 172 COG0516 2-74 -32.100 19  [C] KOG3378 Globins and related hemoproteins
3-153 -23.500 16  [C] COG1017 Hemoglobin-like flavoprotein
8 d4hsxa_ a.1.1.2 (A:) Dehaloperoxidase {Amphitrite ornata [TaxId: 129555]} 137 COG0516 1-64 -29.000 10  [C] KOG3378 Globins and related hemoproteins
2-137 -28.200 12  [C] COG1017 Hemoglobin-like flavoprotein
9 d1ecaa_ a.1.1.2 (A:) Erythrocruorin {Midge (Chironomus thummi thummi), fraction III [TaxId: 7154]} 136 COG0516 1-134 -30.400 16  [C] COG1017 Hemoglobin-like flavoprotein
10 d1x9fd_ a.1.1.2 (D:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit D1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} 140 COG0516 2-139 -40.800 16  [C] COG1017 Hemoglobin-like flavoprotein
11 d1x9fc_ a.1.1.2 (C:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C) {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} 149 COG0516 4-147 -25.200 12  [C] COG1017 Hemoglobin-like flavoprotein
5-77 -27.900 12  [C] KOG3378 Globins and related hemoproteins
12 d1cqxa1 a.1.1.2 (A:1-150) Flavohemoglobin, N-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} 150 COG0516 1-150 -91.700 45  [C] COG1017 Hemoglobin-like flavoprotein
13 d1jl7a_ a.1.1.2 (A:) Glycera globin {Marine bloodworm (Glycera dibranchiata) [TaxId: 6350]} 147 COG0516 2-147 -56.300 18  [C] COG1017 Hemoglobin-like flavoprotein
14 d1it2a_ a.1.1.2 (A:) Hagfish hemoglobin {Inshore hagfish (Eptatretus burgeri) [TaxId: 7764]} 146 COG0516 5-80 -34.300 22  [C] KOG3378 Globins and related hemoproteins
11-142 -20.400 11  [C] COG1017 Hemoglobin-like flavoprotein
15 d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT, sensor domain {Bacillus subtilis [TaxId: 1423]} 169 COG0516 34-160 -15.800 16  [C] COG1017 Hemoglobin-like flavoprotein
16 d1itha_ a.1.1.2 (A:) Hemoglobin {Innkeeper worm (Urechis caupo) [TaxId: 6431]} 141 COG0516 1-73 -33.400 12  [C] KOG3378 Globins and related hemoproteins
2-140 -25.400 16  [C] COG1017 Hemoglobin-like flavoprotein
17 d3g46a_ a.1.1.2 (A:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]} 146 COG0516 1-78 -34.500 19  [C] KOG3378 Globins and related hemoproteins
10-146 -27.500 17  [C] COG1017 Hemoglobin-like flavoprotein
18 d1b0ba_ a.1.1.2 (A:) Hemoglobin I {Clam (Lucina pectinata) [TaxId: 244486]} 142 COG0516 2-140 -39.600 15  [C] COG1017 Hemoglobin-like flavoprotein
19 d1gcva_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Houndshark (Mustelus griseus) [TaxId: 89020]} 140 COG0516 1-67 -27.800 16  [C] KOG3378 Globins and related hemoproteins
2-138 -21.100 15  [C] COG1017 Hemoglobin-like flavoprotein
20 d3d1kb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]} 146 COG0516 1-72 -28.000 16  [C] KOG3378 Globins and related hemoproteins
3-141 -15.400 10  [C] COG1017 Hemoglobin-like flavoprotein


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.