current user: public

anford Burnham Prebys Medical Discovery Institute
Please be advised that due to the planned maintenance our websites might be temporarily unavailable on December 17-18, 2018. We apologise for the inconvenience that this may cause.

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 2581next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 VFG000851(gi:2576413) (aafA) major fimbrial subunit of aggregative adherence fimbria II AafA [AAFs (VF0214)] [Escherichia coli str. 042] 160 COG0516 17-158 -9.290 13  [S] COG5430 Uncharacterized secreted protein
2 VFG000854(gi:4689214) (aafB) invasin homolog AafB [AAFs (VF0214)] [Escherichia coli str. 042] 146 COG0516 1-137 -9.100 10  [R] COG5633 Predicted periplasmic lipoprotein
3 VFG000853(gi:4689215) (aafC) aggregative adherence fimbria II usher protein AafC [AAFs (VF0214)] [Escherichia coli str. 042] 856 COG0516 7-855 -189.000 33  [NU] COG3188 P pilus assembly protein, porin PapC
4 VFG000852(gi:4596718) (aafD) chaperone protein AafD [AAFs (VF0214)] [Escherichia coli str. 042] 241 COG0516 6-240 -81.000 19  [NU] COG3121 P pilus assembly protein, chaperone PapD
5 VFG000865(gi:387604907) (aap/aspU) Dispersin [Dispersin (VF0215)] [Escherichia coli O44:H18 042] 116 COG0516 1-82 -7.140 12  [S] COG4939 Major membrane immunogen, membrane-anchored lipoprotein
6 VFG044024(gi:169639785) (ACA60977) alpha-toxin [alpha-toxin (septicum) (VF0416)] [Clostridium septicum str. NH2] 443 COG0516 163-280 -6.880 [S] COG4719 Uncharacterized protein conserved in bacteria
7 VFG000110(gi:15641470) (ace) accessory cholera enterotoxin [Ace (VF0130)] [Vibrio cholerae O1 biovar El Tor str. N16961] 97 COG0516 1-97 -7.830 10  [A] KOG2253 U1 snRNP complex, subunit SNU71 and related PWI-motif proteins
8 VFG002166(gi:29375675) (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] 674 COG0516 171-592 -10.200 10  [TZ] KOG4035 Coeffector of mDia Rho GTPase, regulates actin polymerization and cell adhesion turnover
284-649 -13.000 [Z] KOG3756 Pinin (desmosome-associated protein)
312-622 -15.000 [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
9 VFG000103(gi:15640861) (acfA) accessory colonization factor AcfA [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 215 COG0516 1-215 -51.000 14  [M] COG3637 Opacity protein and related surface antigens
10 VFG000104(gi:15640857) (acfB) accessory colonization factor AcfB [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 626 COG0516 1-346 -38.000 12  [T] COG2770 FOG: HAMP domain
294-626 -64.400 25  [NT] COG0840 Methyl-accepting chemotaxis protein
11 VFG000105(gi:15640858) (acfC) accessory colonization factor AcfC [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 256 COG0516 4-256 -85.100 50  [R] COG4588 Accessory colonization factor AcfC, contains ABC-type periplasmic domain
12 VFG000106(gi:15640862) (acfD) accessory colonization factor AcfD [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 1520 COG0516 1-720 -11.200 [Q] COG3321 Polyketide synthase modules and related proteins
13 VFG043518(gi:29134931) (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] 721 COG0516 28-721 -19.400 13  [M] COG4932 Predicted outer membrane protein
14 VFG005770(gi:22536832) (acpC) acyl carrier protein AcpC [Beta-hemolysin/cytolysin (CVF171)] [Streptococcus agalactiae 2603V/R] 101 COG0516 16-96 -35.600 21  [IQ] COG0236 Acyl carrier protein
15 VFG011429(gi:17987394) (acpXL) acyl carrier protein [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M] 93 COG0516 3-79 -42.900 27  [IQ] COG0236 Acyl carrier protein
16 VFG011430(gi:17987758) (acpXL) acyl carrier protein [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M] 78 COG0516 3-78 -49.400 48  [IQ] COG0236 Acyl carrier protein
17 VFG000068(gi:16802250) (actA) actin-assembly inducing protein precursor [ActA (VF0066)] [Listeria monocytogenes EGD-e] 639 COG0516 1-371 -12.000 10  [S] KOG4502 Predicted membrane protein
3-332 -15.700 [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
323-633 -11.200 [R] KOG0231 Junctional membrane complex protein Junctophilin and related MORN repeat proteins
18 VFG002420(gi:21281752) (adsA) Adenosine synthase A [AdsA (VF0422)] [Streptococcus pyogenes MGAS315] 772 COG0516 108-631 -66.700 19  [F] COG0737 5`-nucleotidase/2`,3`-cyclic phosphodiesterase and related esterases
141-737 -14.000 12  [L] KOG2310 DNA repair exonuclease MRE11
19 VFG042423(gi:218921796) (afaA) fimbrial major subunit AfaA [Afimbrial adhesin, AFA-I, mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863] 101 COG0516 23-81 -7.200 18  [TQ] COG2508 Regulator of polyketide synthase expression
20 VFG042441(gi:13236678) (afaA-VIII) AfaA-VIII [Afimbrial adhesin, AfaE-VIII (AI015)] [Escherichia coli str. 239 KH 89] 127 COG0516 1-79 -7.780 13  [K] COG1758 DNA-directed RNA polymerase, subunit K/omega


FFAS is supported by the NIH grant R01-GM087218-01
1 2 0 2 9 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.